Neodiprion pinetum (white pine sawfly): 124211367
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Entry
124211367 CDS
T08966
Symbol
Mp
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npt04147
]
124211367 (Mp)
00535 Proteoglycans [BR:
npt00535
]
124211367 (Mp)
00536 Glycosaminoglycan binding proteins [BR:
npt00536
]
124211367 (Mp)
Exosome [BR:
npt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124211367 (Mp)
Proteoglycans [BR:
npt00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124211367 (Mp)
Glycosaminoglycan binding proteins [BR:
npt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124211367 (Mp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
124211367
NCBI-ProteinID:
XP_068989437
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All DBs
Position
2:complement(26926090..27082379)
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AA seq
1170 aa
AA seq
DB search
MSPSFSTLIILSAVFITVRNQAFDPFNEKNVMSWELLRSVMKAFPEGKFIQFTSGLDKLL
AYKLLPGSDIKRPHRLHLPDKLPKEFTLVASFKTLQRSGPSYLFAVLNPLDTVIQLGIKI
SDGPGTNQNVTLLYTNSDQHSLSDEIATFTVQRLVNKWTEIVFRVTTTDVTLYVNCHEFG
KQKVTRIPSELIFDTASKLYIAQAGPNIKGNFYGILQSLDLYQGTDPYLVKCNIGNDFHF
PDAEGGSGNDSDSDSLFNVKDLFDKNEDDDDDDRQYPIIPPPPPPPNMDPRGQKGDKGDK
GEKGESVRGPPGPTGPPGPGYDGEQKGIVGPQGEPGEKGEPGTCSCNTTALMSSFTMPKM
MQGQKGETGASGAEGKQGLPGLPGAAGPPGERGQPGMKGPKGDMGITGADGVEGPQGRKG
EAGRDGVPGEKGATGPPGPPGKGEISGYDPSWKPRSMYRMEGITMRPGLPGHKGDPGTPG
ERGPKGETGVAGAKGVKGEMGLKGTKGDHGKDGSSGLQGFKGEPGSPGAPGVPGAPGANG
TPAEKGSKGDAGPEGKMGPTGPPGPPGPKSEGGINVGDIDPGEKGDKGDKGDQGFKGDFG
SKGEKGDRGDLGPAGIPGVNGIQGPQGNKGEPGKDGLPGSSGTPGTKGERGEKGPPGVTA
IAGPGDYVTIKGEKGARGRKGKQGSPGPAGPPGPAGKNGATGEIGLPGWMGRPGPAGIPG
NPGGTGSKGDKGEPGAPSPYGLSVGVKGDKGDAGTPGTPGQPGRDGQRGPSGPPGPAGPP
SLGKYIPVPGPPGPPGPPGSPGLSFIGQKGEPGIRRGHIFMDPGDSRYGSRQGPRSSLDE
IKALRELKQLKELKEHYGSGTVSTRGPPESTTKIVPGAVTFQNTEAMTKMSAVSQVGTLA
YIIDEEALLVRVNNGWQYIALGSLLPITTPAPPTTAPPPIKPPFEISNLVNQILLKTDGT
GLRMAALNEPITGDMHGIRGADYSCYRQSRRAGFRSSTFRAFLSSRVQNVDSIVRFADRD
LPIVNTKGDVLFNSWKEMFNGDGAYFSQSPRIYSFSGKNILTDFSWPEKVAWHGSHKYGE
RAMDTYCDAWHTSSSDRYGLGSPLNGERLLEQIRYSCDSKFALLCVEVTTQTSRRRRDVD
NEEQFDVMEDDDVELSEEDYNRHLAELMEY
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccagtttcagcactttgatcatcttatcggccgttttcatcaccgtgcgaaat
caggcgttcgatccattcaacgaaaaaaatgtgatgtcatgggaattgttgcggtcagtg
atgaaagcgttcccagaaggaaaattcatacaatttacttccgggttggacaagcttctg
gcctacaaacttcttcccggatcggacatcaagagaccccacagacttcatttgccggac
aaattacccaaggaatttacgctcgtcgcctctttcaaaaccctccagcgtagtggaccc
agttatctctttgccgtacttaatcctttagacaccgtcatccagctgggtatcaaaatt
tcggacggccccggaaccaatcagaacgtaacgctcctctacactaactcagaccagcat
tctctgtccgacgagatagcgactttcacggttcaacgtctggtcaataaatggactgaa
attgtcttcagagtcacgaccaccgacgtcacgctctatgtaaattgtcacgaattcggg
aagcagaaggtaaccagaattccgtcggagctcatctttgacaccgctagtaaactgtac
atagcacaggctggtcccaacattaaaggaaacttttacgggattcttcagtcgctcgac
ttgtaccaaggaactgatccgtatttggttaaatgcaacatcggaaatgactttcatttt
ccagatgccgagggggggtcaggtaatgattcagattcagactcattattcaacgtgaaa
gatttatttgacaaaaacgaggatgacgatgatgacgacagacagtacccgatcattcct
ccacctccaccgccgccgaatatggatccgagggggcaaaagggggataagggagacaaa
ggggaaaaaggtgagagtgtcagaggtccaccaggacccacgggaccaccgggacctggc
tatgacggcgagcagaagggaattgttggccctcaaggtgaacctggagagaagggagag
cctggcacgtgttcgtgtaacacaactgccctcatgtcgtccttcacaatgccaaaaatg
atgcaggggcaaaagggtgagacgggtgcgtcgggggcagaaggaaaacaaggcttaccg
ggattgccgggcgccgcagggcctcctggtgaacggggccaaccgggtatgaagggcccc
aaaggcgatatgggcataacaggagctgatggagtggaaggtccgcaaggtcggaaggga
gaagcaggccgagacggtgttcctggagaaaagggggccacaggtcctccaggtcccccg
ggaaagggagaaatttccggatacgaccctagctggaaacctaggagcatgtacaggatg
gaaggaataacgatgcgtcccggacttcccggccacaaaggtgatcctggtactccagga
gaacgtgggcctaagggggaaactggggtagcgggtgcgaagggagtgaaaggcgaaatg
ggtctgaagggtacgaagggtgaccacggaaaggacggctcatcagggctccaaggattt
aagggagagcccggatcgcctggagcaccgggagttccaggagctccaggagcaaacggc
acgccagctgaaaagggcagcaaaggagacgctggtcccgaaggaaaaatgggacctacc
ggacctccagggcctccaggacccaagtcggaaggtggaataaacgttggtgatatagat
ccaggtgagaagggcgacaaaggagacaagggtgatcagggattcaagggtgatttcggc
tcgaagggtgagaagggtgaccgaggggatttgggtcccgccggtattcccggggtcaac
ggaatccagggtccccagggcaacaagggcgaaccaggaaaagatgggctgcccggatcc
agcgggactcccgggacgaagggcgaacggggtgagaaaggaccgccaggagtgacggcc
attgcgggtcctggggattacgtgaccatcaagggcgaaaagggcgctaggggaaggaag
gggaaacaaggatcgccgggaccggctggacctcctggacccgctgggaaaaatggcgcg
actggagaaattggactgccgggctggatgggtcggcctggtccagcaggaattcccggt
aatccaggtgggacgggatccaagggtgataagggcgaaccaggcgctccgagtccctac
ggactttccgttggggtcaaaggggacaaaggagatgccggaacacccgggactcctggt
cagccaggtcgggatggtcagcgaggtccttcaggaccacctggtcccgcaggtccgccg
tcgctaggaaaatacattccagttcctgggccaccaggacctccgggtcccccaggttca
cccggattatctttcatcggccagaagggagaacctggcatcaggcgaggtcatatcttt
atggacccgggagacagccgttacggatctagacaaggaccgagaagcagtttggacgag
ataaaggctctccgagagcttaaacagctcaaggagctcaaagaacactacggatccggt
accgtgtcaacgcgaggtccaccggaaagtacaacaaaaattgttcctggtgctgtgaca
ttccaaaatacagaagccatgaccaagatgtcagcagtcagtcaagtcggtacattggcg
tacataattgacgaagaagctctccttgtcagggtgaataacggatggcagtacatcgct
ctcggatcgctcctaccaatcacaacgccagccccaccaacgacggctccacccccgata
aaaccaccgttcgagatttcaaacttggtgaatcaaatcctgttgaagacagacggtaca
gggctgcgaatggctgcactaaacgagccaattaccggtgacatgcatggaattcggggc
gcggattattcctgctaccgacaatcgaggcgagctggcttcaggagcagcactttccgg
gcgtttttgagctcaagggtacaaaatgtggacagcattgtcagattcgccgaccgagat
ctgccgatcgtgaataccaagggagacgtcctgttcaattcctggaaggaaatgttcaat
ggagacggcgcctacttttcgcaaagcccgagaatctacagcttcagtggaaaaaatatc
ctcacagatttctcttggcctgaaaaagtcgcttggcacggatcgcacaagtatggcgaa
agggcgatggacacttactgcgatgcttggcataccagtagctcggatcgttacggattg
ggttctccgttgaacggagagcggcttctggaacagatccgatattcgtgcgatagtaaa
ttcgctctattgtgcgtggaggtgactacacagacgtctagacgtcgcagggatgtagac
aacgaagagcaatttgacgttatggaagatgacgatgtagaattgtccgaagaagattac
aacagacacttggcggaactgatggaatattaa
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