Neodiprion pinetum (white pine sawfly): 124211368
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Entry
124211368 CDS
T08966
Symbol
Hpr1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124211368 (Hpr1)
09122 Translation
03013 Nucleocytoplasmic transport
124211368 (Hpr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124211368 (Hpr1)
03041 Spliceosome [BR:
npt03041
]
124211368 (Hpr1)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124211368 (Hpr1)
Spliceosome [BR:
npt03041
]
Complex C
Other components
EJC/TREX
124211368 (Hpr1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124211368 (Hpr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
RraB
Carbpep_Y_N
Motif
Other DBs
NCBI-GeneID:
124211368
NCBI-ProteinID:
XP_046466311
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All DBs
Position
2:26910170..26928164
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AA seq
651 aa
AA seq
DB search
MASFETLRHDYNNHLEKCFKLSDLSGFQKKCLEMNTNVSNRKSIVDQALRDTLLTVLLDD
SVGNVQHLESYITFCIELCRKDLTTASMPVILLGDIFDCMTLDRCEKLFTFVENNVVVWK
EEIFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLD
NHTEFGNEKSEQEVLEQIVEDGDNTENKIPIDYNLYRKFWALQDFFRNPNQCYNKMHWKV
FSAHTSHVLSAFTSFKLEEQRSLPTKCTKMDTSSEENYKETHYFAKYLTNQKLLELQLSD
SNFRRYVLLQFLILFQYLNSAVKFKAETHELKPDQVEWVKTTTDQVYLLLSETPPNGSDF
AETVKNILKREEHWNAWKNHGCPPFKRPALESNSEGEEPRKQKRRIGDVIRAAEDEKKYH
LGNPELTKLWNLCPNNLEACKSMDRDFLPSLETYFAEAIEQLDPAAMVDDEYKKVNDGNF
GWRALRLLARRSPHFFVHGNNPINKLPEYLEAMIKKIAKDRPQTQSDIKTESEEIPTDGN
EAEFNEDVLKQETEQVEVDASTTKFSKFNKVTADIVAKLSDILKGNWKDLAAKFGYHANE
IAFFQKKRTQYEQCKSMLEIWAEEDEDASIENLAYILEGLGFTEAVAVLKS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttcgagacactgaggcatgattacaacaaccacctggaaaaatgcttcaag
ttgtcagatttatccggattccaaaaaaagtgtctggaaatgaacacaaatgtctcgaat
agaaagtcaatcgtcgatcaagcgctgcgagatacgctgcttactgtactgctggatgat
tctgtgggaaacgtacagcatcttgaatcttacataacgttttgtatcgagttatgcagg
aaagacttaacaacggctagcatgccagtcatattactcggtgacatatttgattgcatg
acattggaccgatgtgaaaagttattcacgtttgtcgagaacaatgttgttgtgtggaaa
gaagagatatttttcagtgcctgtaaaaacaatttactcaggatgtgcaacgatctgctc
agaagactttctcgctctcaacaaactgtattttgtggaaggattcttctattccttgcc
aaatttttcccattctctgagaggtcagggttgaacatagttagtgaatttaatctcgac
aatcacaccgaatttggcaatgagaaatcagagcaagaagtgcttgagcagatcgtagaa
gatggcgacaacactgagaacaaaattccaatagattacaatctgtaccgaaaattctgg
gcgctgcaagactttttcagaaatccaaatcagtgctataataaaatgcattggaaggtt
ttctctgctcatacgtcgcacgtcttgtcagcgttcacatctttcaaattagaagagcag
cgtagccttccaacaaaatgtacaaagatggacacttcgtcggaggaaaactacaaggaa
actcactacttcgcaaagtatctcactaatcagaagctgttagagttgcagttgtcagat
tcgaactttaggagatacgtactacttcagttcctgatactctttcagtacctcaacagc
gccgtaaaattcaaagccgaaacacacgagctgaaacctgatcaagtcgaatgggtcaag
acaacaacagaccaagtgtatttattactgtctgaaacacctcccaatggatctgatttt
gcggaaactgtaaaaaacattttaaaacgagaagaacactggaatgcctggaagaatcat
ggatgtccaccgtttaagaggcctgctcttgaatccaactctgagggagaagaaccaaga
aaacaaaaaagacggatcggtgacgtaatccgagctgccgaagatgaaaaaaagtatcat
ttaggaaatcctgagttgacaaagctatggaatttgtgccctaacaatttggaggcttgt
aaatcaatggacagagacttcctgccttccctagaaacttatttcgccgaagctatagag
caattggatccagctgcgatggtcgatgatgaatacaagaaagtaaatgatggtaacttt
ggttggagagcactgcgattactcgctaggcggagtcctcatttttttgtacatgggaat
aaccccatcaacaaattaccagagtatttggaagctatgataaagaaaatcgccaaagat
cgaccgcaaacgcagtcggacataaaaacagaatccgaagaaattcctaccgacggaaac
gaggccgaattcaacgaggacgtacttaaacaagagaccgaacaagttgaggttgacgca
tcaacaacaaagttcagtaaattcaacaaagtgacggccgatattgttgcgaaactgtca
gatatattaaaagggaactggaaagatctagcagcgaaattcggataccatgccaacgaa
atcgcattctttcagaagaaacgaacacagtacgaacagtgtaaaagcatgttagaaatc
tgggccgaagaggacgaggatgcatcgatcgaaaatttggcttacatcctcgaaggattg
ggctttacagaggcagttgctgtattgaagagctaa
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