Neodiprion pinetum (white pine sawfly): 124211998
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Entry
124211998 CDS
T08966
Symbol
hay
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03022
Basal transcription factors
npt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124211998 (hay)
09124 Replication and repair
03420 Nucleotide excision repair
124211998 (hay)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124211998 (hay)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124211998 (hay)
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124211998 (hay)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124211998 (hay)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124211998 (hay)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
124211998
NCBI-ProteinID:
XP_046467601
LinkDB
All DBs
Position
2:38902380..38907952
Genome browser
AA seq
797 aa
AA seq
DB search
MGPPKRFKKDNDKGKWKKRKEDHDEYFDDDHGDGGDTEGIPDAAKNDIEKQDEGAVEDEF
GAKDYRSQMILKPDNSSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEY
KLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPDGIIEFIQLCTLSYGKVKLVLKHNKYF
VESPFPEVLQKLLKDPVIQECRLRRNLDETDKDGFITNVQDKTKAPQFGTKTSATATPTT
APAPAEGNGEQPSAEPVAVPEDISTFYDKIDKEDEDEEEEAQLKTVSFEVNQEKIEVIQK
RCIELEHPLLAEYDFRNDTVNPDINFDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPC
GAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG
CGILVTTYSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHC
KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREY
LSCKTSKKLLLYVMNPSKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIYG
PTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGR
ILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPDL
MYKTREEQGQLLQQVLSASDMDADEERIPGEGPRPAMRRPGNMASMSGADDTVYYEYKKS
AASSTANKHPLFKKFRT
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggcccgccaaagcgattcaaaaaagataatgacaagggcaaatggaaaaaacgtaag
gaagatcacgatgaatatttcgacgacgaccacggtgatggtggtgatactgaaggcatt
cctgatgcggctaaaaatgatattgaaaaacaagacgaaggggctgttgaagacgaattt
ggagctaaagactatcgctcgcaaatgatcttgaagccagacaactcgtcgaggccacta
tgggtggctccaaatggacacatattcttggaatcattttcaccggtatacaaacatgct
cacgattttttaattgccatttccgagcccgtttgtcgaccagagcatattcacgagtac
aaactgactgcttattccttatatgcagccgtgagtgtgggcctccaaacccacgatatt
atcgaatatctaaaacggttgagcaaaactagcatcccagatggaatcattgaattcata
caactgtgcacgttatcttatggaaaggtgaaattggtcttgaaacacaacaaatacttt
gtggaatctccatttccagaagtgttgcagaaactgcttaaagatcctgtcattcaagaa
tgcaggttgagaaggaacttggatgagactgacaaagatggtttcattaccaatgttcaa
gataaaacaaaagctcctcagtttggtacaaaaacatcagctactgctaccccaacaaca
gcaccagctccggctgaaggaaatggagagcaaccatcagcagaaccagttgcagtgcct
gaagatatctcaacattttatgataaaattgataaagaggatgaagatgaggaggaagaa
gcacagctgaaaactgttagctttgaagtcaaccaggaaaaaattgaagtcattcaaaaa
agatgtatcgaattggagcatcctttacttgcagaatatgatttcagaaacgatacagtt
aatcctgacataaattttgacctgaaaccatcagccgtgctgcgaccatatcaagaaaag
agcttgagaaagatgtttggtaacggacgagccaggtcgggtgttatcgtactaccttgt
ggtgctggtaagagtttagttggcgtaacggcttgctgtacagttcggaaacgcgcattg
gtgctttgtaattcaggagtatcggttgagcaatggaaacagcagtttaaaatgtggtcg
acggccgacgattccatgatttgtcgatttacaagcgaagctaaggataagccaatgggt
tgtggtattctggtaacaacttactcgatgataacacatacgcaaaaacggtcgtgggaa
gctgaacagaccatgaaatggttgcaagaacaagaatggggtattatggttttagatgaa
gtacatacaatacctgcgaaaatgtttcgtcgagttttgaccattgttcaatcccactgc
aaactcggactaaccgcaaccttgttgagagaggatgataaaattgcagatctgaatttt
ttaattggtccaaaactctatgaagctaattggcttgagcttcagaaaagaggatttatt
gccagagtacagtgtgctgaggtctggtgtcccatgactccggagttttatagagaatac
ctgagttgtaaaacaagcaagaaactgttgctttacgttatgaatccgagcaaatttcgt
tgctgtcagtatttgattcgatatcatgaaaggaggggtgataagacaattgttttctcc
gacaatgttttcgcactgaaacattatgcaatcaagatgaataaaccctatatttacggt
cctaccagtcagagtgagcgtatacaaatcctccaaaacttcaaattcaatacaaaagtg
aatacaatatttgtgagcaaagtagcagacacatcattcgacttgccagaagcaaatgtt
ttgatacaaatatcttctcacggaggttctaggagacaagaagctcaaagactgggtaga
attttacgagctaaaaaaggcgcaattgctgaagagtacaatgctttcttttacaccttg
gtatcacaggatacaatggaaatgaactattcaagaaagaggcaaaggtttcttgtcaac
caaggctatgcttataaagtcatcaccaaactcgctggaatggatgaggaaccagactta
atgtataaaacacgcgaggaacaaggtcaactattacaacaggtattgtcagcaagtgac
atggatgcggatgaggaaaggattccgggagaagggccaagacctgcaatgaggaggcct
ggaaatatggcatccatgtcaggtgctgacgacacagtatattacgaatacaaaaagtcc
gccgcatcatcgacagccaacaagcatccgttatttaaaaaattccgaacctaa
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