Neodiprion pinetum (white pine sawfly): 124212037
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Entry
124212037 CDS
T08966
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1 p55 subunit
KO
K10752
histone-binding protein RBBP4
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03082
ATP-dependent chromatin remodeling
npt03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124212037 (Caf1-55)
03083 Polycomb repressive complex
124212037 (Caf1-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npt03036
]
124212037 (Caf1-55)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124212037 (Caf1-55)
Histone modification proteins
HAT complexes
HATB complex
124212037 (Caf1-55)
HDAC complexes
Sin3A-HDAC complex
124212037 (Caf1-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
124212037 (Caf1-55)
PRC2.2
124212037 (Caf1-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
124212037 (Caf1-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
124212037 (Caf1-55)
Chromatin remodeling factors
NuRD complex
124212037 (Caf1-55)
NuRF complex
124212037 (Caf1-55)
NuRF complex (fruit fly)
124212037 (Caf1-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_RFWD3
ANAPC4_WD40
eIF2A
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT140_1st
MIOS_WD40
Beta-prop_DCAF4
YqbF
Motif
Other DBs
NCBI-GeneID:
124212037
NCBI-ProteinID:
XP_046467725
LinkDB
All DBs
Position
1:complement(23149383..23155596)
Genome browser
AA seq
427 aa
AA seq
DB search
MGDKDGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGK
DYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEI
KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE
GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKTIFTGHTAVVEDVAWHLLH
ESLFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPDTPAS
ELEGGAS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaaagacggagaaacatttgacgatgcggttgaggaacgtgtcatcaatgaa
gagtacaaaatatggaagaaaaatactccctttctgtacgatcttgtaatgactcatgcc
ctggagtggccctcccttacagctcaatggttgcctgatgttacaagaccagaagggaaa
gattattctgtgcaccgtcttattttgggtactcatacttccgatgaacaaaaccacttg
ctaattgccagcgtacagttacccaatgaggatgcacagttcgatgcttctcattacgac
aatgagaaaggagagtttggaggatttggatctgtcagtggaaaaattgaaatcgagata
aaaatcaatcacgaaggtgaagtcaacagggcacgttacatgccgcaaaatccatgcgtc
attgctacaaaaactccctccagtgacgtactagtatttgactataccaagcatcccagc
aaacccgatccaaacggtgaatgccatccagatctcaggttgcgtggacatcaaaaagaa
ggatacggcttgtcgtggaatccaaacctgaacggctacttgttgagcgcatctgacgat
cacactatatgcttgtgggacatcaatgcaacacctaaagagcatagagtaatcgatgcc
aagactatatttactggtcacacagctgtggtggaagatgtcgcttggcatttgctccac
gagtccttgtttggatcagtagctgatgaccaaaaacttatgatttgggatacaagatgt
aataacacaagtaagccgagccatactgtggatgctcatacagcagaagtaaactgtctg
agtttcaacccttactcggaatttatattagccacaggcagtgctgacaagacggtagct
ctgtgggatctgagaaatttgaagttgaagcttcactcattcgagtcccataaagacgaa
attttccaagtacaatggtcaccgcacaatgagacaattttggctagcagcggaaccgac
agacgcttacatgtttgggatctgagtaagatcggagaagaacagtccactgaagatgct
gaagatggaccacccgaattactgttcattcatggtggacatacagccaaaataagtgac
ttctcttggaaccccaatgagccatgggttatttgttctgtgtcagaagacaacataatg
caagtttggcaaatggctgagaacatttacaatgacgaagaaccagatacgcctgcaagt
gagcttgagggtggagcgtcataa
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integrated database retrieval system
