Neodiprion pinetum (white pine sawfly): 124212696
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Entry
124212696 CDS
T08966
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124212696 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124212696 (Taf5)
03036 Chromosome and associated proteins [BR:
npt03036
]
124212696 (Taf5)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124212696 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
124212696 (Taf5)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124212696 (Taf5)
STAGA complex
124212696 (Taf5)
TFTC complex
124212696 (Taf5)
SAGA complex
124212696 (Taf5)
SLIK complex
124212696 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR19_1st
WD40_like
RMC1_N
Beta-prop_SPT8
Beta-prop_RIG_1st
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_DCAF12
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
124212696
NCBI-ProteinID:
XP_046469004
LinkDB
All DBs
Position
2:42449812..42453703
Genome browser
AA seq
652 aa
AA seq
DB search
MDNEKSTMLAVLQLLRKYNLKGTEELFRKEANLTDVSAEDSQQTDSEVSSVLSAYKSEGD
PALYEKAYTELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSGEAKQLLEKFSGN
LEEYYQEDLKRLSNVTKREQIAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSILL
NIIQEHLYFDMYEGVARNKQQIEATSGAVVGEATRQDNKAKVYYGLLKEPDIQCVPPAEE
EEDDGGGEGGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREA
SKRVVLGPDSLPSICFYTLLNSVHSVTAAEVAEDSSLLAIGFSDSAVKVWSLVPQKLRLM
KSGDQLQDIDREADDVLVRMMDDRTAESSRTLYGHSGPIYSLSFSPDRNLLLSSSEDTTV
RLWSLHTWTCVVCYKGHLFPVWSVRFSPHGYYFATGSHDKTARLWATDAHQPLRIFSGHY
SDVDVVQFHPNSNYVATGSSDRTVRLWDCVTGGQVRLMTGHKGPIYSLAFSAEGRFLATA
GADNRVLIWDLAHGHLVAALSSHTATVHCLFFSRDGNILVSGSLDSTLKLWDFTKLAEEM
SLEDVNVSHNPDVKTCVETYLLRTFPTKNSPVLTLHFSRRNLLLAVGMFEVS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgagaaaagcacaatgcttgcagtattgcagctgttacggaaatacaattta
aagggtaccgaggagttatttagaaaggaagcaaacttgacggatgtttcagctgaggat
agtcaacaaactgattctgaagttagcagcgtactatcagcttacaaaagcgagggtgat
ccagcgctgtatgagaaagcctataccgaacttaagaaattcgtcgaaggagctctggat
atttacaagcatgaacttggcacaatattgtatccggtattggttcacatgtacctggaa
cttgtttacaacaaccattcaggagaagcaaaacagctgctggagaagttcagtggtaat
ttggaggaatattaccaggaggatctgaagcgattgtcaaatgtcacaaaacgggaacag
attgctggtaatgagctgacggatactttcaagtctaaccagtttattataaggatgtcc
cgagacacgctttccatactcaagcggcatcttcaagagaaaaaacatagcattttgctc
aatattattcaagagcatctttactttgatatgtacgaaggtgtcgctcggaacaagcaa
cagattgaagcaacgtcaggcgctgttgtgggggaagctacgcggcaagataacaaggct
aaagtctattatgggcttttaaaggaaccagatattcagtgcgtcccgccggctgaggaa
gaagaagacgatggcggtggggagggaggagataaaccaaagaaaaagaaagcaaaaaaa
gatccactcttttctaagaaaactaaatcagatcctaatgcacctccggtcggaagaatg
cccctaccaaatttgaaagatgctgataaactggagaaggttaaagcattgagagaggct
tcaaagagagtggtattggggccagacagtcttccgtcaatatgcttctatactttattg
aattcagtacacagcgttactgctgcagaagtcgcagaagattccagtttgctggccatt
ggcttcagtgattccgcagtaaaagtatggagcctggtgccacaaaaattaagactgatg
aaaagtggggatcaattacaagacatcgaccgcgaagctgacgatgtacttgtgagaatg
atggacgacaggacagctgaatcgtcgagaaccctatatggacacagcggacctatttat
agtttgtcgtttagcccagacagaaatttactactatcttcatcagaggacaccacagta
aggctatggtctcttcatacgtggacctgtgttgtttgctacaagggtcacctgttccct
gtttggtcagtgagattctcaccacatggttactatttcgcgacaggttcccacgacaag
actgcaagactctgggcaactgacgctcatcagcctctccgaattttttccgggcattac
tcagatgtcgatgtcgtacaattccatccaaattcaaattacgttgctacgggatccagc
gaccggacagtcagactgtgggactgtgttactggaggtcaggtgcggttgatgaccggc
cacaaaggtccgatatattccctagcattttccgcggaaggtcgcttcctggcgactgcg
ggtgccgataacagagtcctgatttgggatttagcgcacggacatttggtcgcagcctta
tccagccatacagccacagtacattgcttgttcttcagtagagacggtaatatcttagtg
tcaggatccctcgattcgacactgaagctttgggactttaccaaacttgctgaagaaatg
agcttggaggacgttaacgtctcgcataatcctgacgtcaaaacatgcgtcgagacctac
ctcctacgaacttttccgacaaaaaattcacccgttctcaccctccacttttcgcgaaga
aatcttctactagcagtcggtatgttcgaagtatcttag
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