Neodiprion pinetum (white pine sawfly): 124212837
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Entry
124212837 CDS
T08966
Symbol
DNAlig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124212837 (DNAlig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npt03400
]
124212837 (DNAlig3)
Enzymes [BR:
npt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124212837 (DNAlig3)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
124212837 (DNAlig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124212837
NCBI-ProteinID:
XP_068989497
LinkDB
All DBs
Position
2:7126999..7205813
Genome browser
AA seq
1047 aa
AA seq
DB search
MSDGDESPEEKPFAVERAKTGRAKCKKCKCPIEQGVVRVAKLMSNPFGDGKMKAWHHLTC
IFEVFAKQRASTKRIDDLDDDVAGWQELDDEGKELVQGKLEEFNDSAPVKNANKKISPGK
KNTEKRDSLAKNESRNDNSSNKGKTSVGGSKSSVEPIPSTSKVSPKKETPVGKCRDDAFR
EFRRLCASVANANAYTSKTAIVRQMLTKGCEGDGFKGDVTLWCKMLLPGVTKRVYNLQSK
QLVKLFSRMFNKDEDEMLEHLEQGDVAETIHAAFENSSLLQPSAQSHLTIREVDQFLDKL
SLLTKEDEQIQHFKSIVTRCTANDLKMIIRQVKHDLRITAGPKHILDAIHDDAYAAFQSS
RDLETVVSRFVEDSPLFSSSKKSAGNRETDPKRTSTGSKVGLTLMTPVLPMLAEACKSVE
MAMRKCPDGMLSEIKYDGERVQVHKQGNQFRYFSRSLKPVMPHKVNHFHDFISKAFPGGD
DLILDTEVLMIDTNTGKPLPFGSLGVHKATQFKDANVCLFVFDCLYYNGETLMDKSMQKR
RSILKEKMVVIPNRIMLSEVEEVQDPKDLAHMIAKVIKMGLEGLVLKDVTGKYEPGKRHW
LKVKKDYLLDGAMADSADLVVLGAWYGTGKKGGMMSVFLMGCFDEDRNRWLTVTKVHTGH
DDVTLERLQGELKMEKIGKDVNLLPSWLHANKAMVPDFVAKDPKKQPVWEITGAEFTNQG
VHTADGISIRFPRVTRIRDDKDWKTATSLKELRTLFARSSDSVDVSLLLGNQTTSTSTVQ
RSLDSMLKPKAEKSEIENDGNSGNNQEELDEKSETEKCDEKNPSLLSRNGIARGNGSEVK
LEGDVKTATEIKEEPKSHGEDAHPSTRRGAKRKSDVLIDVKMKKEPDFSTTSTSSEGDGL
SKRKRLPRDLDESDYTDHTTNKAFKTVRVLLARDVKKDRRKALRNILKTLGAKVLEEEDQ
HLATHVIHSKAEVPTTIIQNYRRIFRKPELVQSECKGIVHLAWRKSGKFFFFYFSEIENA
TLTPFCCLYHWRIYGLISCTHNVSHSK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacggcgacgaatcgccggaggaaaaaccgtttgcggtcgaacgtgcgaaaacc
ggacgagctaaatgcaagaagtgcaaatgtccgatcgagcagggtgtcgtcagggtcgcg
aaattgatgtcgaacccgttcggcgatgggaaaatgaaggcgtggcatcacttgacctgc
atctttgaagttttcgccaagcagagggcgagcactaaacgcatcgacgatctcgacgac
gacgtggctggatggcaggaactcgacgacgaggggaaggaactcgtccagggaaaactc
gaggaattcaacgattcggcccctgtcaagaacgcgaataagaaaatatcaccagggaag
aaaaatactgagaaaagagattctttggcgaaaaatgagtcgcgcaacgataattcgtcc
aacaagggaaaaacatccgtcggtggatcgaaatccagcgttgagccgattccgtcgacg
tcgaaagtctcgccgaagaaggaaacgcccgttggaaaatgcagggatgatgctttcagg
gaatttagaagactctgcgcatccgtggcgaacgccaatgcgtacacgagtaaaacggca
atagtcagacagatgctgaccaagggctgcgagggcgacggtttcaaaggcgacgtcacg
ctttggtgcaaaatgctgctacccggggtcactaagcgagtttacaaccttcagagtaaa
cagctggtcaagctatttagccgcatgttcaacaaggacgaggacgagatgttggaacac
cttgagcagggcgatgtcgccgagactatacacgcggcgttcgagaatagttcgcttctt
caacccagcgcccagagccacctcacgatacgggaggttgaccaatttcttgacaaactc
tcactgctgaccaaggaggacgaacaaatccaacatttcaagtccattgttaccagatgc
actgcgaatgacttgaagatgatcatcagacaggtgaaacatgacttgagaattacagcc
ggtccgaaacacatcttagacgccatccacgacgacgcgtatgctgcgttccaatcatcg
cgtgatctcgagacagtcgtgtccagattcgttgaggattcacccttgttttcaagctca
aaaaaatcggctggtaatcgtgagaccgatccgaagagaacttctaccggtagcaaagtc
ggtctgactttgatgacgccggttttaccgatgctggccgaggcgtgcaagtctgtagaa
atggcgatgaggaaatgtccggacgggatgctctcggagatcaaatacgacggtgaacgt
gttcaagtccacaagcagggtaaccagttccggtacttcagtcgctccttgaaacccgtc
atgccgcacaaggtgaaccacttccacgattttatatcgaaagcatttccaggaggtgat
gatctcatactagacaccgaagtcctcatgattgacacaaacaccggaaaaccgttaccc
ttcggatctcttggtgttcacaaagcaactcaattcaaggacgccaacgtttgtttgttc
gtgttcgattgtttgtactacaatggcgaaacattgatggataaatcgatgcaaaaacgg
cggtcaattctgaaagaaaaaatggttgttataccaaatcgaataatgttatcagaagtc
gaggaagttcaggatccgaaagacttggctcacatgattgcgaaagttataaaaatgggt
ctggaaggacttgttctgaaggatgtaacgggaaaatacgagccaggaaaacgacactgg
ctaaaggtaaagaaggactatttgctcgatggtgcgatggccgatagtgcagatttggtt
gttctcggcgcatggtacggcaccgggaaaaaaggtggcatgatgtcggtgttcttgatg
ggctgtttcgacgaggaccgaaatcgttggctcacagtcactaaggttcacacgggtcac
gatgacgttactctcgagcgactccagggtgaattgaagatggaaaaaatcggcaaagac
gtgaatctgctgccgagttggctccacgcgaacaaggcaatggtcccggactttgtggct
aaggacccgaagaaacagcccgtctgggaaataaccggggcagaattcacgaaccaagga
gttcacacggctgacggaatcagcattcgatttcctcgagtaacccgcatccgggatgac
aaggattggaagaccgcgacgtcgctgaaagaattgcggactctcttcgcgagaagttcc
gattccgttgacgtcagtctactgctgggaaatcagaccacgagcacttcgaccgtacag
cgatccctggattcgatgctgaaaccgaaggcggaaaaatcggagattgaaaacgacggt
aattccggcaacaatcaggaggaactagatgaaaaatccgagacggagaaatgcgatgaa
aaaaacccctcgttgttatctcggaacggaattgctcggggcaatggaagcgaagtgaaa
ctcgaaggcgatgttaaaacggccaccgaaatcaaggaagaacctaagagccacggcgaa
gacgctcatccgtcgactcgtcgtggtgcaaagcggaaaagcgacgtcctaatcgatgtc
aaaatgaagaaggaacccgatttttcaacaacgtcaacctcttctgaaggggatggatta
tccaagaggaagagattacctcgggatctcgatgaatcggactacactgatcacacgacc
aacaaagcgttcaaaactgtccgagttttactggcgcgggacgtaaagaaggacaggcga
aaagctcttcgaaacattctgaaaacactcggagccaaggtgctggaagaggaagatcaa
cacttggccacgcacgttattcattccaaggcggaagttccaacgacgataattcaaaac
taccgtagaatttttcgtaaaccggaattagttcagtcggaatgtaaaggaattgtgcac
ctggcatggcgtaaatcaggcaaatttttttttttttacttttcggaaatcgaaaatgct
accttaacaccattttgctgcctgtatcattggcgaatctacggactcatttcatgcact
cacaatgtgtcacactcgaaataa
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