Neodiprion pinetum (white pine sawfly): 124213020
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Entry
124213020 CDS
T08966
Symbol
CPSF2
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124213020 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124213020 (CPSF2)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124213020 (CPSF2)
U7-dependent histone pre-mRNA processing factors
124213020 (CPSF2)
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
124213020
NCBI-ProteinID:
XP_046469743
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Position
2:41186927..41190940
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AA seq
737 aa
AA seq
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MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL
SYPDPLHLGALPYLVGKCGLTCPIYATIPVYKMGQMFMYDMYQSRNNMEDFDLFTLDDVD
AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK
ERHLNGCELERLQRPSLLITDAFNAMYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTA
GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN
NPFQFKHLQLCHSMAELNQVPSPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRTS
PGTLARDLVEHGGNRNITLEIKRRVKLEGAELEEYQKKQKLKQEQIKQEAMETADVSSES
EDEIEVGGAKGKHDLLVKQEIKPGFFKQSKKQHPMFPFIEEKIKVDEYGEIIRPEDYKIA
EATPEMEDNKENVEIKQEDATPQPEIAADIPTKCIQMTRTVTVNASVTYIDFEGRSDGES
LQKILAQLRPRRVVLVRGSQQDTEVLAQQAQNAGARVFIPGRGETLDATTETHIYQVRLT
DALVSGLNFSKGRGDTEVAWIDALMTVRDQIRRDAVADTDSSEIVDQADQILTLEPLPLN
EVPGHQTTFINELKLSDFKQVLNRSNIPSEFSGGVLWCCNNTIAVRRHEAGKVILEGCIS
EEYYKVRELLYEQYAIV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgatcatcaaacttcatgccatttccggagcgatggacgaatcccctccgtgt
tatatactccaagtcgacgagctgagaatactccttgattgtggatgggatgaaaatttc
gatcaggatttcatcaaggagctcaagagacacgttcaccaaatcgatgcagtattactg
tcatacccagatccattgcacttgggtgctctaccgtacttagtgggaaaatgtggcctt
acttgtccaatatatgctacaattccagtctacaaaatgggccagatgttcatgtacgat
atgtaccagtctcgtaataacatggaggatttcgacttgtttacgctagatgatgttgac
gctgcattcgataagatagttcagctaaagtataatcagagcatctcaatgaaaggtaaa
ggctatggagtgacattgacgcctttgccagcaggccacatgattggtggaactatttgg
aagattgttaaggttggggaagaagacatcatttatgcggttgacttcaatcacaaaaag
gagaggcacttgaacggatgcgaattggaaaggctgcaacgtccctccctgctaattact
gatgcttttaatgctatgtaccagcaagccaggcggagaactagagacgaaaagcttatg
acaaatattctacaaactcttcgaggtggcggcaacgttctggtaggggtagatacagct
ggcagagtactggagctggcgcacatgttggatcaactttggcgaaataaggaatctggt
ttgcttgcctactcgctagcacttctcaacaatgttagttataacgttgtcgagtttgcc
aaatcacaaatcgagtggatgagcgataaattgatgcggagttttgaaggggccaggaac
aatccgttccaattcaagcatttacagttatgtcacagtatggccgaactcaatcaagta
ccaagtcctaaggttgttttggcaagcacacctgacatggaatgtggtttctcacgagaa
ctctttttgcaatggtgcagcaatccgcaaaacagcattatacttaccagcagaacctct
cccggtacgttagcgagagatttggtggaacacggtggaaacagaaacatcacgttggaa
ataaaaaggcgtgtcaaattggaaggtgctgagttagaagagtatcagaaaaagcaaaag
ttaaagcaagaacaaataaaacaagaagcaatggaaacagcagatgtgagttcagaatct
gaggacgaaatagaagttggtggtgcaaaaggaaagcacgacttgttggtgaaacaggaa
atcaagccaggctttttcaagcagagtaagaagcagcatccaatgtttccattcatagaa
gagaaaatcaaagtggacgagtatggggaaattatcagaccagaagactacaaaatagct
gaagcgacgcctgaaatggaagacaataaagagaacgttgaaataaaacaagaagatgcc
actccacagccagaaattgcagcagacataccaaccaaatgtattcaaatgacacgcaca
gttacagtcaatgcttctgtgacgtacatagatttcgagggtcgctctgacggtgaatct
ttgcaaaaaattcttgcacagctcagacccagacgtgttgtcttggtcaggggctcccaa
caagataccgaagttcttgctcaacaggctcagaacgctggagcaagagtgttcatccct
ggcagaggagaaaccctagacgccacgactgaaacacatatttaccaagttcgtttaaca
gacgcattggtcagtggattgaatttctccaagggtagaggagacacagaggttgcttgg
atagacgcactgatgaccgttcgcgatcaaatacgtcgcgatgctgttgctgatacagat
tcttcagaaatcgttgatcaagcggaccaaatacttacccttgaacctctaccgctcaac
gaggttccaggacatcaaacgacttttataaatgagctgaaattatctgatttcaagcag
gtattaaatcgtagtaacattccgtcagaattcagtggtggtgttctgtggtgctgtaat
aacacgattgcagttagaaggcatgaggcaggtaaagtgatcctcgagggatgcatttcc
gaagaatattacaaagtgcgagagctactgtacgaacaatatgcaattgtttga
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