Neodiprion pinetum (white pine sawfly): 124213176
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Entry
124213176 CDS
T08966
Symbol
Sym
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124213176 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124213176 (Sym)
03019 Messenger RNA biogenesis [BR:
npt03019
]
124213176 (Sym)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124213176 (Sym)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124213176 (Sym)
U7-dependent histone pre-mRNA processing factors
124213176 (Sym)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124213176
NCBI-ProteinID:
XP_046470131
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All DBs
Position
2:28468648..28478938
Genome browser
AA seq
1113 aa
AA seq
DB search
MDPRLHRRQESEKKGSSDLVVEWLNDASMSTSESVKLTNLAKVNEFLIHKEPKLLDLYLD
ETLQFSLDRSSEVRKLIAGFLEEAGCKQPDLIPRLVQTLARLVGDDASAVIKRALRAAGR
ILRATLKWISSVAIITTDMELAWTQLSNLKVAIINMIDSDNDGIRTQAVKFLEGVVLLQT
YPDPDAPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMG
SLALIAKTRPQFMRQVIQALQLLQHDLPPTLSDSQVTSVQKQLKLTLLGLLKHPASIEFA
GTMARQLNQLGAREQEIMKAYPKVEDIRKMKKRQQETAAASAAKRAKLEAAIAVEEPEQQ
PMEIESVKPPELIELSENFISDRLSVEIATELVMDSMAWVPDVMTSVFQREYQPTSTTDI
NVQRQTIARLLAVQIKQAKAKRVKRETKEEDAVMEDLIKNPTITVAEAKRERKREKDREK
EKEAKASLEAHEKSLKMAKNRLKTLKLSEITKPLQRETKEKMLLMAVGRILGAERIAVLG
GVAPVRSKILTTLAATFNPYIREAVLRYITEDMRCRLDLALGWLYEEYALLQGFQRRTTL
TSKPQEAPHQAYNFLLCTLVSAIDLVPGKDRDVLLSRLYLEAPLITEDAVEALKLVSSDE
TRGLAPLELLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIEFVVQLYSRPELAKLI
EEYAVLYLGFLRLPNPPEIVFGQDRGRPQIDDQWSESTTRACLGLYLALLSEHQDLIYEL
ARVYTSMGADVKRIILRLVEGPVRLLGMSSPQLLSLVENCPKGAETLVTRVIHILTEKSA
PSAELVAKVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGT
HNNDSGIPHMSPITPAELLIALHTIDTSKAELKTVIKATSLCFAEKQVYTQETVAVVMQH
LMEMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQHKVWEGFVKCCERTQP
QSFSVILQLPPAQLAEALKMSPGLKAPLLAHVESFAENQKAHIPQSVMDVIQGKMLPVVA
DEFDIAPPGEYPLELKSEPMDTDPSEPAPPGLD
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggacccacgcttacacagaagacaagagtctgaaaaaaagggctcgagcgacttggtc
gtagaatggcttaatgatgcttctatgagcacaagcgaatccgtaaaattaaccaatttg
gccaaagttaatgagtttttgatacacaaggaaccaaagttgctggatctatacttggac
gaaacgttgcaattctctttagataggagtagcgaagttagaaaacttatcgcaggattt
ttggaagaagctgggtgtaaacaacctgacctgattcctcgattagtccaaacacttgca
agattagttggagatgatgcatcagctgtgatcaaacgggcgcttagagcagcgggaaga
attcttagggcaacattgaaatggatatcaagtgttgcgattattacaacagacatggaa
ctcgcttggacacagctgagcaatctgaaggttgcgataataaatatgatcgacagtgac
aatgatggaatcaggacgcaggcagtaaagttcctggaaggagtcgttttgctgcaaaca
tatccagatcctgacgctccaaaaaagccggatgacttctccttagaagatattccatta
acactaaaaatagctcggagaagaaaacttgaggaggaggcaaaccatgttatggatttg
ttgattaaatttcatggttctccacacgttagtagcgtcaatttgatgacttgtatgggg
tccttggcattgattgctaaaactaggcctcagtttatgcgtcaagtaattcaggcctta
caactcctacaacatgatctaccaccaacgctgtccgattcacaagtaacgagtgtccag
aagcaacttaagctcacgctattgggattgctaaaacaccctgcaagcatagagttcgca
ggaacgatggcaagacaattgaaccagctcggggcaagagagcaagaaatcatgaaggcc
tatccaaaagtcgaggatattcgtaagatgaaaaaacggcaacaggaaacagcggcagca
tctgcagccaaacgtgcgaaattggaggctgcaattgcagttgaagagcctgagcagcaa
ccgatggaaattgaatccgtgaagcctcctgaattgattgagctttccgaaaattttatc
agtgaccgtctaagtgtggaaattgccacagaactagttatggatagtatggcttgggtg
ccagatgtaatgacgtcagtgttccaacgagaatatcagccgacgtctacaactgatatc
aacgtgcaacgtcaaactatcgccaggctactagccgtacagataaagcaagctaaggcc
aaaagggttaagagagaaacgaaagaggaagatgcggtaatggaagacctaataaaaaat
ccaacaatcactgtagccgaggcaaaacgtgaaagaaaacgagaaaaggacagggagaaa
gagaaagaagctaaggcttcattggaggcacacgaaaagtcgcttaaaatggcgaaaaat
cgtttgaaaacgctgaagctatccgaaattacaaaacctcttcaaagagagactaaagag
aaaatgctccttatggctgtaggcagaattctcggagctgagaggatcgctgtactcggt
ggagtggcaccagtcaggtccaagatattgacgaccctagctgctacgttcaacccatac
ataagggaagctgtgctccgctatataactgaggacatgaggtgtcggcttgatttggcc
ctcggctggctctatgaggagtacgctttgcttcagggattccaaaggcgtacaacactg
acgagtaaaccgcaggaagctcctcatcaagcctacaactttttactctgcactttagtt
tctgcaatcgacttggtaccagggaaagatcgagatgtgttgttgtcgcggttgtatctg
gaagcccctctaatcacagaagatgccgtggaagctttaaaactggtctcgtccgatgaa
acgagaggactcgcacctttggaattactcaaggaaatggttattcggagaccgacaaag
cagctagtatttttgaatgtattactgtgtcatacaggacatgaaaataatactattcgt
gaagcagcgatagagtttgttgttcaattatatagccggccagagctggccaagttgata
gaagaatatgcagtgctgtatttaggttttctacgattaccaaacccacctgaaattgta
ttcggacaggatagaggaaggccgcagatcgacgatcagtggagtgaatcaacaacccga
gcttgtctaggattgtacctagcattactgtcggaacaccaagatcttatttacgaactc
gccagggtttatacctcaatgggagctgatgtcaaacgtatcatcttacgcttggttgaa
ggaccggtgagactcttgggaatgagtagtccacagctattgtcccttgtcgaaaactgt
ccaaaaggggcggaaaccctggttacgcgagttattcatatccttacggaaaaatccgcg
cctagtgcagaactggtggccaaagtacgtgaactttatcaaacaagagtgtctgatgtt
agatttttgatacctgttcttaacggcttgactaaaaaagaagttatcgccgctcttccc
aaacttatcaagttgaacccgatcgtcgtgaaagaggtattcaatagactccttggaacc
cataataatgacagtggtataccacacatgtcgccaataacgccagcagaacttctcatc
gctttacatactatagatacgagcaaagcagaattaaaaacagtcataaaggcaacttct
ttatgctttgctgagaaacaagtctatacacaagaaacggtggcagtagtgatgcagcat
cttatggaaatgacgcccctgccgacgcttctgatgcgaacagttattcaaagtctagct
ttgtaccctagactgagcggatttgtaatgaacattttacaacgattaattctgaaacag
gtctggaaacagcacaaagtttgggaaggattcgtgaaatgctgcgagcgaactcagccc
cagagtttttcagttatcttacaattaccgcctgcccaattggcagaggcattgaaaatg
tctccgggattgaaggcacctctacttgcacatgttgaatcgtttgccgagaatcagaaa
gctcacattccacagtctgtaatggatgtgatccagggaaaaatgttgcctgttgttgcg
gatgaatttgacattgcccctcctggtgagtaccccttagaactcaaatcagagcccatg
gacactgacccttcggaaccagcgccacctggacttgactag
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