Neodiprion pinetum (white pine sawfly): 124213204
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Entry
124213204 CDS
T08966
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124213204
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124213204
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GFIT
Motif
Pfam:
Smg8_Smg9
MMR_HSR1
RsgA_GTPase
nSTAND3
ABC_tran
NB-ARC
RNA_helicase
AAA_14
DUF6498
Motif
Other DBs
NCBI-GeneID:
124213204
NCBI-ProteinID:
XP_046470203
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Position
2:17022057..17027537
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AA seq
379 aa
AA seq
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MSSRKTLSASKDMDNKDGENRALIKVIDRPTFILKTREGESRAVSPSQRNGSKKDTESNT
SSKLPDTRPALSTRLEMTHTVKFMDEGMQLLESPLDFLYDQQDFLVVGCVGTRGVGKSTI
MSLLTANYMSDVFPTQTLSHHESGSNCTSGVDFYVTKNRVIYLDTQPILSGVAIDHSGLY
EQKKNNNDFANIENNVELQSLQLTSFLLSVCHIVIFIQDWFVDPNLIRFIQTAEMLKPSS
ASAMDQDFVEYYPHILFLHNKAELQDFMPDSMNMMKDFYNKVFINSRLLTHSGLNMASSV
VDGLLNLFVIPEITNEDETIVHDSAEKISEKLRMRIHGISRNNMTSTVLTEKNWYHYASK
IMDTIKKSHLFSEYGRLMP
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgagttcccgtaaaacactttctgcttcaaaagatatggataataaggacggtgaaaat
agggcactgatcaaagttatcgatcgtccaacatttatattaaaaacccgagaaggagaa
agccgtgcagtgtctccgagtcaacgaaatggcagcaaaaaagatactgaatctaatact
tcatctaaattgccagatactcggccggcactttccacccgtcttgaaatgacacacacc
gttaagttcatggatgaaggaatgcaacttttggaaagtcctttggattttttatacgat
caacaggattttctggttgttggatgtgtcggaaccagaggagtaggaaagtcgacaata
atgtcattgttgaccgccaattacatgtctgatgtttttccaacacaaacgttgtcgcat
cacgaaagtggctcgaattgtacgtctggcgtagatttctatgtgactaaaaaccgagtt
atctacttggacactcagcctatattatctggggtggcaattgatcactctggattatac
gagcaaaagaaaaataacaacgattttgcaaacatagaaaataacgtggaactgcaatcc
ttacagttaacatcgtttctgctgtctgtttgtcacattgtaatattcattcaggactgg
tttgtagatcccaatttaatcagattcattcaaactgccgaaatgctgaaaccttcttcg
gcgtctgctatggatcaagactttgtcgaatattatccacacatcctctttctgcacaat
aaagctgagttacaggatttcatgcctgattctatgaacatgatgaaagacttttataac
aaagtatttataaactctagactgctgacacacagtggattaaatatggcttcatccgtc
gttgatggactactaaatttattcgttataccagaaattacaaacgaagatgagacaatc
gttcatgatagtgcagaaaaaatatcagaaaaattgcgtatgagaatacatggtatatca
cgtaacaacatgacttcaactgtattgactgaaaaaaattggtaccattatgcttccaaa
attatggatacgataaagaaaagtcatttgttttctgaatatgggagattaatgccgtga
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