Neodiprion pinetum (white pine sawfly): 124213252
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Entry
124213252 CDS
T08966
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
npt01009
]
124213252 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124213252 (HDAC6)
04131 Membrane trafficking [BR:
npt04131
]
124213252 (HDAC6)
03036 Chromosome and associated proteins [BR:
npt03036
]
124213252 (HDAC6)
Enzymes [BR:
npt01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124213252 (HDAC6)
Protein phosphatases and associated proteins [BR:
npt01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124213252 (HDAC6)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124213252 (HDAC6)
Membrane trafficking [BR:
npt04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124213252 (HDAC6)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124213252 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
NuDC
Motif
Other DBs
NCBI-GeneID:
124213252
NCBI-ProteinID:
XP_046470326
LinkDB
All DBs
Position
2:12872147..12881746
Genome browser
AA seq
1202 aa
AA seq
DB search
MTDTNASGNSLFTAARQLAESEIHLIQVIEGTRRSNRKVAKSNMTTTVKNVGGKKSAKSM
SARPSAALAAAKREAAERKLVHPKKSGNTILRDIYQKAMDAQTITRGETGLVWDRSMEEH
RCLWDSTYPECPERFTRILERCKDLGLISRCRVIEAREATHKEILLKHTQQHIDVLKETA
ECKDEDNLEKLASKYDSIYIHPSTYRLSLLATGSTIILLESICKKKVQNGMAIIRPPGHH
AMKAEYCGYCYFNNVAIAAQKMLNDNLASRILIVDWDVHHGQATQQMFYNDPRVVYFSIH
RYEHAEFWPNLRESNYDYVGEKKGEGYNFNVPLNKTGMTNADYIAIFQQLLLPMAYEFQP
DLVIVSAGYDAALGCLEFCPDIVIVSAGFDSAIGDEKGEMNVTPACYAHLLHPLMGLAGG
KVAVVLEGGYCLKSLAEGAALTLRTLLGDPCPMLHALEKPSRSIQESILNVIYAHKSYWS
CYQYQDTHSLNVPANSIEEKNNRHLPNIIFKNREPKPEIYDTRNCYPVPSAELAAEFDTK
LNLLIEFTNLNKAPNKVCIVYDDRMLCHTNIVDNTHPERPERISGIFSKHEEYGFLKRCH
LLQGRMATEEELSLAHSKTYIEMIKKTSSTKLKDLSKQASELKSVYLHTETWKSASVSAG
CLLQVVDSVLTGESQSGLAIVRPPGHHAERDTACGFCIFNNVAVAARYAIKNYNLKRVLI
VDWDVHHGNGTQSILETDPQILYASIHRYDNAGFFPNSKRANYTVTGTGPGEGYNVNIPW
NKKGMGDPEYIASFQQVIMPIAYQFNPELILVSAGFDACIGDPLGGCNVSPEVYGHLTHS
LSSLANGRVILSLEGGYNVSSISYASLMCTKALLGDPLVMIDLQQPPCSSAINSINNVLR
THKQYWPNLMFQKSLPKENVLPKLKTTTSRNKSEKRRGASRKTSESKIVFEDIESEKLEI
SLPIDKFSLNIVTDEEINKLQNEIENLKIKNFESDSLDFDSSGGHEIHTGIPKKYEEINE
ANYGKTCVNPNQNQGSDRRNDEGDQSGSRGGNNPNDLSGAAGAAGAGSLMQYLSENMQAL
VDGEMFAIVPLRDCPHLPTVEEVPADGIDVRAPCQECNSTAENWICLQCYTVHCARSINE
HAVTHGEATQHPMTLSFSDLSVWCYGCEAYIDNPRLYAARNAVHRSKFNQDLPWTYNNLE
IA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacaaatgccagtgggaacagcctatttactgccgctagacaattggcagag
agtgaaatacatctgatccaggtgatagaagggaccagaagaagtaacagaaaagttgca
aaaagcaacatgaccacaacagtgaaaaatgttggcggtaaaaaatcagccaaatcgatg
agtgccaggccttcggcggcgttggcggcagcaaagcgagaggcagcagagcgaaagctt
gtccacccgaaaaaatctggaaacactatcctcagagacatttaccagaaggccatggac
gcccagacaataacgcgtggcgaaacaggtcttgtttgggataggtcgatggaagaacac
cggtgtctttgggattcgacatatccggaatgccctgagaggttcacaaggattctggaa
agatgcaaagacttgggcttgatcagtcgctgcagggttatagaagcgcgtgaagccact
cataaagaaatattactcaaacacacacagcagcatattgatgtgctgaaagaaactgca
gaatgcaaagacgaggacaatcttgaaaagttggcttcaaaatatgactctatttacatt
catccttcgacttatagattatcgctgctggctactggctcaacgataattttgctggaa
agcatatgtaaaaaaaaagtacaaaacgggatggctataatcaggccgccaggtcatcat
gcaatgaaggctgaatattgtggctactgttacttcaacaacgtagctattgctgcacag
aaaatgctcaatgataatttggcaagcagaatattaatcgttgactgggacgttcatcac
ggacaagcaacccaacaaatgttttacaatgatccgagagttgtttacttctccatccat
cgatacgaacatgccgagttttggccaaatcttagggaatcaaattacgattacgttggg
gagaaaaaaggggaaggttacaatttcaacgttcccctcaacaaaactggaatgacaaat
gctgactatatcgccatatttcaacagctccttcttccaatggcttatgagtttcaaccg
gaccttgttattgtctcagctggttacgacgcagctcttggctgccttgagttttgtcct
gacattgtcattgtgtctgccggattcgattcagcaattggcgatgagaagggtgaaatg
aacgtgacgccagcttgttacgcgcatcttttacatccattgatggggttagctggtggt
aaagttgcggttgtattggagggtgggtattgcctaaaatctctagcagaaggagctgcg
ttaactttaagaacattactgggagatccttgcccaatgttgcatgcgctagaaaaaccg
tctcgcagcatacaggaatctattctgaatgtcatatatgcccacaaaagttattggagt
tgttaccaatatcaagacacgcacagcttaaatgttccagcaaatagtatagaggaaaag
aacaacagacacctgcccaacattatttttaaaaatcgggagcctaaaccagagatttac
gacacgcgaaattgttatccagttccgagtgcagagttagctgccgagttcgacaccaag
ttaaatttattgatcgaatttacaaatttgaacaaagcgcctaacaaagtttgcattgtt
tatgacgacagaatgctctgtcatacaaatattgtggataatacccacccagaaaggcct
gagagaatatcgggaattttttccaaacacgaagaatatggatttctcaaacgatgccat
ttgctccaaggaagaatggcgacggaggaagaattgtcactggctcattcgaagacgtat
attgagatgataaaaaaaacctcatcaacaaagctgaaagatctatctaagcaggcgtct
gaattaaagtcagtctaccttcacaccgagacgtggaagagcgcttctgtctctgccgga
tgtttgcttcaagttgtggatagcgtcttgaccggggagagccagtcgggcttggcaatc
gtcaggccgccggggcatcatgcagaacgagatacggcctgtggattctgcatatttaac
aacgtggctgtcgctgccagatatgctataaaaaattataacttgaagagggtgttgata
gtcgattgggacgttcaccatggcaatggaacccagagtattttggaaacagatcctcag
attctgtatgcatcgattcatcgttacgacaacgctggtttcttcccgaattcgaagcgg
gcgaattatacagtgactggaactggtccgggagaaggatataatgtgaatataccttgg
aacaaaaaagggatgggagacccagagtacatagcgagcttccaacaagtcatcatgccg
attgcataccaattcaatcctgaactaattctggtttccgcaggtttcgatgcctgcatt
ggggatcctttgggaggatgcaatgtttcaccggaagtgtatggtcatctcactcactcg
ctgagttctttggcaaacggtcgggttattctatcactcgaaggtggctacaacgtcagt
tcgatttcctacgcatcattaatgtgcacgaaagccctgcttggagatccattggtgatg
attgatctccaacaaccgccgtgttcaagtgccataaactcgatcaacaatgtgttacga
acgcacaagcaatactggccgaatttaatgttccaaaagtctttgccaaaagaaaatgtc
ctcccgaaactcaaaactaccacgtctcgcaataaatcagagaaacgtcgtggtgcttcc
agaaaaacgtccgagtctaagatcgtgtttgaagatatcgagtcggaaaaattggagatc
tctttgccaattgataaattcagcctgaacatagtcacggatgaggaaataaacaagcta
cagaatgagattgaaaatttaaagataaaaaatttcgaaagcgattctctcgattttgac
agttcaggaggacatgaaattcatacaggaatcccgaaaaagtatgaggaaatcaatgaa
gcaaattacggtaaaacctgtgtcaatcctaatcaaaatcaaggatctgatagacgaaat
gacgaaggtgatcaaagtggaagcagaggaggaaataatcctaatgatttgagcggtgct
gctggcgcagcaggagcaggtagcctgatgcagtatctttcggaaaacatgcaggcactg
gtagatggtgaaatgtttgctatcgttccgctacgggattgtcctcacttacccactgtc
gaagaagtgccagcggacgggattgacgttcgagctccttgccaagagtgcaatagcact
gcagaaaactggatttgcctgcagtgttacacggtacattgtgcaagaagtatcaatgag
catgcggttactcatggcgaagcgacgcagcatccgatgacgcttagcttcagcgatttg
tctgtctggtgttatggttgtgaagcgtacattgacaaccctcgactttacgcagcgaga
aacgcggtccatcgaagtaaatttaatcaggacttaccttggacttacaacaatttggaa
attgcttaa
DBGET
integrated database retrieval system
