Neodiprion pinetum (white pine sawfly): 124214154
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Entry
124214154 CDS
T08966
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npt03400
]
124214154 (SPG11)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124214154 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
SKA2
Daxx
Motif
Other DBs
NCBI-GeneID:
124214154
NCBI-ProteinID:
XP_046472190
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All DBs
Position
3:complement(23164476..23175179)
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AA seq
1824 aa
AA seq
DB search
MDTVGGIPVECLTGELAGVWSGWRILGDREIVREASAKGTHINLAIKCLATRRNCPLTEA
EAYFYREVDVWVKELLDKQQVFRATHILKNAGKNPKEYINVICINSRDQKLRDYLVQHLR
KIDGLQASELKAWQLFNIMNDYKAKYFVEDDPITNKSIEEIIQMPEDLKIIICTDLYFHT
FQGELVEYLSSQIVWDYLLMRNKVDLILFWIDINYGVHQLNPSSKDKELYEALKHLKITD
NVIDSTQQSSAASITKEVVLDYLGRYGVFTSNEAVSVKHVLTRLLNNKIVPAKFEKILSQ
PSCNIQNRNLLSKLNIGLYSKSYLEEDHMLDVDKKIQRFTIALERVASSSASIEEFGGCI
LATIDYISDDAVNYLETNPLVFLSLIFLLYRKKTAQFVESDRAPHRILSDTVMNNEGVQF
GSTLMVPRDVVNSILHRFPHFERAILGKTVARDSNMYQLLNGFKNFNASRSFLWRQRTNQ
MPTFYNEYLVKRYGHKEKLTYINYLKQGRPNMAVRLFVYDQKKFHHDISSKMKCQASTEA
HILALRNITLPEITSACVSFIEAIGVDSETLRLHLTVAKRIQDQLEISAGELLESVVYKN
ASDLKTLSSHLEHCFKQHLKETIEENPCELITAIKDWDLNIKFAQTHKTLLPESFLEYLV
QRELCFEFLLVGQIFDYPIDQMLRLVKKLANPSIKGHLLACLDNPNLCSGDSINFVDRQL
KSRDSRQFLYSKIGLRNCSSGSESPTESGSHAPGNSMESFMCLSHDDLWMAILKCHYSQD
PPGSLVQTAHCHGAPFLVVLATCYEPSAIPAYWCSWLVISTNDRSIITDYKDCLDRQIWP
ADRVLKLLTRLVASGYTKTITKSLQIFMPENPLRLFAEFLTQCVNLGDFESGQEKLHTFK
TACSGLVSNMNISWMDSDPSYLKNSYWIILASIKCATIALGYSFSSTVSQMEFIKVLCSS
NFSADLPDAPDFGQLFTIMEILKDTEVSLNFTYLSSFDDPNLLEKEIQRCLAQLAQSDNY
KVALRLCNALNINCSDVIIAEWRKEFEKTLVEDGQLVTKCWINCSKDFEKYHVSYETAAQ
FYVEFAEKVVSHKERFEILKLAHEILQGTSVNPNIKHGVEMAMWKSCILADPDTIDFNNA
PISLNKLKTELMSGLSELQVCCELTEPGEKLAAEKLLERFLDTGHLGTALRIAKIFNYKH
RDLQILMLCLSLAEGEVSPYELTAQQRLLLSTKPKLKNQWQVAYSGKGFPKVSSMSSQSQ
KLSEDETGDISMEVALEAANSTPEKLVKIDCIFQLERFTEILSHGIAAGRKVLLCYRLAT
HLGKSYQNLLTLTDPIAFLEEIVAGECDYKLEVIKDVVAAYNINNHQLAEFLSEKIESSI
VRHIEGGHIDQPMTMWGYTLDGNFHIITELCSEPSLLGSKLLHTTTRLLGRFHGENRDAS
TLRVIVELLIKSHDCFTAACNMEGIASILRKSQQLANSLQNLKQWGLLVRLLTGVGRFTE
MNYILQIIKENEQFEFLLTGRGLEKIPGLKTALLDFLKRNCPDNEDLFKLVAHHFCLYSE
IASIWEQEAKEAIKKVLINARIECRNEGNLNPGDIRLRKNDITEKQLHLAMINYTHATEY
YLQDQRKYENPLFDIKRRLYSGFQTHQQDSKLSLAYQCCHLAELVALQISFLNSVHQNQQ
VLCVLNLGSADIDRMICNDLNFSQANILIRAYNHPVDWGSVLYAQCITRTNAKYLKDFMT
INELTTAIVKDSVKRYQLEKHITKEMVENMQQLISRLKDVKCKYTLASQLGFKNVIETIL
GDAAVSAYLKDTVWRKGYTSTAFE
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atggatactgtgggcggcattccggtcgagtgtctaacgggtgaattggcaggtgtttgg
tcaggttggcgtatactgggggaccgtgagatagtcagagaagcatcggcaaaagggacg
cacattaatttggccataaaatgtcttgcgacaaggagaaactgcccacttacagaggca
gaagcttatttttatcgcgaggtcgacgtttgggtaaaggagctgcttgacaaacagcaa
gttttcagagccacccacatactaaaaaatgcgggaaaaaatcccaaggaatatatcaac
gtcatttgcatcaatagcagagatcagaaactgcgcgattacttggtacaacatttgagg
aaaatagacgggctccaggcatcagaattaaaagcgtggcagctttttaacatcatgaat
gactataaggccaaatatttcgtggaagatgatcctataaccaataagtcaattgaagag
attatccagatgccagaagatttgaagataatcatatgtacggatttatactttcataca
ttccaaggagaattggtagagtatttgtcgagccaaattgtttgggattatctattaatg
aggaataaagttgacctgattttattttggattgacatcaactatggagtccatcaattg
aatccttcatctaaagacaaagagctgtatgaagcactgaagcatttgaaaattactgac
aacgtgatagactccactcagcagtcaagcgctgccagtatcaccaaagaagtagtccta
gattacttgggcaggtatggagttttcacatccaatgaagctgtaagtgttaaacacgtg
ctgactagattattaaacaataaaatagttccagcaaaattcgagaagatactcagtcag
cctagctgtaatatacaaaacaggaatctgctgtccaagttgaatattggactctattca
aaatcttatttggaggaggaccatatgcttgatgttgacaaaaaaatacagaggtttacc
attgccctggaacgtgttgcatctagctctgcgagtattgaagagtttgggggatgcatt
ttggcgacgattgattacatttctgacgacgcagttaactatcttgagacaaatcctttg
gtttttttgagtctgatatttttactgtatcgaaagaaaactgcacagtttgttgagagt
gacagagctccccatcgaattctgagtgatactgttatgaataacgaaggtgttcagttc
ggtagtactctcatggttcctagagacgttgtgaacagcattttgcaccgctttccacac
tttgaaagagccattctggggaaaactgttgcacgagattcaaacatgtaccagcttttg
aacggtttcaagaactttaatgcctcgcgaagctttctgtggcgccaaagaactaaccaa
atgcccacgttttataatgagtacctggtcaaaagatacggacataaagagaagctgact
tatattaattatctgaaacaaggaagaccgaacatggctgtgcgactttttgtctatgac
caaaagaaatttcaccatgacatatcttcaaaaatgaaatgtcaggcatcaaccgaagct
cacattcttgctctgcggaatattaccttaccagaaattacctcagcttgcgtttcattc
attgaagcaatcggcgtcgattcggagactctacggctgcatctcactgttgctaaacgc
attcaggatcaactggaaatttctgctggtgaactattagagtcagttgtctacaagaat
gcatcagacttgaaaactttatcatcacatctggaacattgcttcaagcagcatctaaaa
gaaactattgaagaaaacccgtgtgaactgattactgccatcaaggattgggacttaaac
attaagtttgctcaaactcataagactttgctgccagaatcatttcttgaatatttagtc
cagcgagagttatgcttcgaatttcttcttgttggacagatatttgattaccccatagat
cagatgttaagactcgtcaaaaagttagcaaaccctagcatcaagggtcacctgctggca
tgtctcgataacccaaatctgtgcagtggagactcaatcaattttgtggatcgtcagttg
aaaagtcgtgattcaaggcaattcttgtactcaaaaattggtctgagaaattgcagttct
ggcagcgaaagtccaacagagtctggatctcatgctcctgggaattcgatggaaagcttc
atgtgcttgtcccacgatgatctgtggatggcaattctcaagtgtcactatagtcaagat
ccacctggatcattggtgcagacagcacactgccacggagcaccatttttggttgttctg
gcaacttgttacgagccatcagcgattccagcatactggtgttcctggcttgtaatatca
actaacgaccgctcaatcattaccgattacaaagattgcctggatcgccaaatttggcct
gccgatagggtgctgaagttgttgacacggctagttgcttctggttacaccaaaactatc
accaaaagcttacaaatattcatgccggaaaatccactgcgcctcttcgctgagtttttg
acgcaatgcgttaatctaggggactttgagtctggtcaggaaaagctgcatacgttcaaa
actgcttgctctggtcttgtgagcaacatgaacatcagttggatggactcagatccatcc
tacttgaagaattcatactggataattctggctagtattaaatgtgcaacgatcgctctg
ggttatagtttttccagcactgtttcgcagatggagtttatcaaggtgctgtgctcgtct
aacttcagtgctgacctgccagatgctccagactttggacagctgttcacgatcatggag
attcttaaggatactgaagttagcttgaactttacatacctatcttctttcgacgatccg
aacttgcttgaaaaggagatacaaaggtgcttagctcagttagcacagagtgacaattac
aaagttgctctgcgactttgcaatgcattgaatattaattgttcggacgtaataatagcc
gaatggcgaaaggaatttgaaaagactctcgtcgaggatggacagttggtaacaaagtgc
tggatcaattgttccaaggactttgaaaagtaccatgtcagttatgaaacagctgctcaa
ttttatgtcgaatttgccgagaaagttgtttcgcacaaagaacgatttgagatactaaag
ctggcacatgaaattctgcaaggaacttcagtaaatccgaatatcaaacatggcgtagaa
atggcgatgtggaagtcctgcattctggctgatcctgacaccatcgatttcaacaacgcg
ccaatttcactgaataagttgaaaactgaactcatgtctggcctgtcggaacttcaagtc
tgttgtgaactgacagagcctggtgaaaagctagctgcggaaaaattgctcgagcgattt
cttgatactggacatttgggtacagccctaagaatagcgaagatttttaactataaacat
agggatttacaaattttgatgctgtgtctcagcttagccgaaggagaggtcagtccctat
gagttaacagcacagcaacgattgttgctatcgacaaaaccgaaactcaagaaccagtgg
caagttgcgtacagcggcaaaggatttcccaaagtttcatcaatgagttcacagagccaa
aagctttcggaagacgagactggcgatatatcgatggaggttgcattagaggcggcgaat
tctaccccagaaaagctggtcaagatagactgcatatttcagcttgaaagattcactgaa
attctctcccatggtattgctgctggaagaaaagttctgttatgctacagactggcgact
catctgggaaaaagttatcagaatcttttaactttgactgacccaattgcatttcttgag
gaaatagtcgctggtgaatgtgattacaagctcgaagtgattaaggatgttgtggctgct
tataacatcaacaatcatcagttagccgagtttttatctgaaaaaattgagagctcgatt
gtcagacacattgaaggaggccacatcgaccagccgatgaccatgtggggatatactttg
gatgggaatttccacataatcacagaattatgcagtgagccttccttgctcggttcaaag
ctgcttcacactactacgaggctgctgggacgttttcatggagagaatcgtgatgccagt
accctcagagtgattgttgagcttctcataaagtctcatgactgttttactgcggcctgc
aacatggagggaatagcatcgatcctgaggaaatctcagcagttagctaactcccttcaa
aatcttaagcaatggggattgttggtacggctattgacaggtgttggtcgctttactgag
atgaactacatcctgcagataataaaagaaaatgagcagtttgagttcttgttgactgga
agaggtcttgagaaaattccgggactaaaaacggctcttttagatttcttgaagcgaaat
tgcccggataacgaggatctgtttaaacttgttgcgcaccacttttgtctctactccgaa
attgcctcaatatgggagcaagaagcaaaggaagcgattaagaaggtcctgataaatgca
aggatcgaatgtagaaatgagggaaatctcaaccccggagatattagactaagaaaaaac
gatataacggagaaacagctgcatcttgcaatgatcaattacacccatgcgacagaatac
tatttgcaggatcagcgtaagtatgagaacccgctattcgacatcaaacggcgattatat
tcagggtttcaaacccaccaacaggacagtaagctttcgcttgcgtaccagtgttgtcat
cttgctgagttggtggcactccaaatatcctttcttaactctgtgcatcagaatcagcaa
gttctttgtgtcctgaatttggggagcgctgacattgacaggatgatctgtaacgattta
aatttttcacaagctaacattcttattcgcgcctataatcatccagtcgactggggaagc
gtactgtatgctcagtgcatcacacgaaccaacgcaaagtatctaaaagactttatgaca
atcaacgagctcaccaccgccattgtcaaagattctgttaaaaggtatcagttggagaaa
catataaccaaggaaatggtagagaacatgcaacagctgatatcaaggttgaaagacgtg
aagtgcaaatatactctggctagtcagctgggatttaaaaatgtgatagaaactatactg
ggagatgccgcggtcagtgcttatctgaaagatacagtatggaggaagggatatacgagc
acagcctttgagtag
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integrated database retrieval system
