Neodiprion pinetum (white pine sawfly): 124214989
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Entry
124214989 CDS
T08966
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase Ddx1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npt03041
]
124214989 (Ddx1)
03016 Transfer RNA biogenesis [BR:
npt03016
]
124214989 (Ddx1)
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124214989 (Ddx1)
Spliceosome [BR:
npt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124214989 (Ddx1)
Transfer RNA biogenesis [BR:
npt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124214989 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124214989
NCBI-ProteinID:
XP_046473772
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All DBs
Position
3:complement(42937114..42942434)
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AA seq
733 aa
AA seq
DB search
MTAFEEMGVLPEIAKAVEDMDWMLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQTVWETLKDIESGKATISKASPQSSPHWTMSLFDRGRALAVTPDGLRCQSREQREWHGC
RATKGVQGSGKFYYEATVTDEGLCRVGWSMPQANLDLGTDKFGFGFGGTGKKSNAKQFDS
YGEPFGMHDVIGCLLDLTNAEIRFTKNGVDLGQAFSLNAQQKSSIFFPAVVLKNAEMAFN
FGAQPFKHSPPEGYIAISAAPKSSTRDNTVSGNRQSGVDNLKPANNAPQTIIIEPSRELA
EQTFNQIQKFKKHLDNPKVRELLLIGGVNVKEQISALNSGIDIVVGTPGRLEDLIQGGYL
SLTHCRFFVLDEADGLLKQGYTELIDRLHRQIPKITCDGRRLQMIVCSATLHAFEVKKLA
DRLMHFPTWVDLKGEDAVPETVHHVVVMVDPQKDKSWQSMRTHIRTDGVHYRDNVKPGNN
TAETLSEAVKILKGEYCVSAIREHKMDRAIIFCRTKIDCDNLESYLKSIGSNEFTCVCLH
GDRKPQERKANLEKFKRQEVKFLICTDVAARGLDITGLPFMINITLPDEKSNYVHRIGRV
GRAERMGLAISLVSSVPEKVWYHGEWCSSRGRNCSNTNLTDQGGCCIWYNEPRYLGEIED
HLNVTIQQVGPDIKVPLNEFDGKVTYGEKKVNSGTGYQNHVAQMAPAVSQLAGLESKAQL
IYLRRHMNVGKSV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacagctttcgaagaaatgggcgtactgcctgagatagccaaagcagttgaagacatg
gattggatgttgccaacagatgttcaagctgaagcgattcccctaattttaggaggagga
gatgtattgatggctgcagaaactggtagtggtaaaactggtgccttctgtttaccaatc
cttcaaactgtatgggaaactctgaaggatatcgaatctggaaaagcaacgatctccaaa
gccagtccacagtcctccccacactggacgatgagtttatttgataggggccgagcgctt
gccgttactccggatggtttgcgatgtcaaagtcgtgaacaacgcgaatggcatggctgt
cgtgcaaccaaaggtgtacagggtagtgggaaattctattatgaagctactgtgactgat
gaaggtctttgtcgtgttggatggtctatgccacaggcaaacttggatctgggaaccgat
aagtttggatttggttttggtggaactggtaagaagtcgaatgccaagcagtttgatagt
tatggagagccgtttgggatgcatgatgtgattggctgcctgttagatttaaccaatgct
gaaattcgttttactaaaaatggtgttgatttgggccaagcgttttctttgaacgcgcaa
caaaaatcttccatattcttccccgcggttgtattgaaaaatgctgaaatggcattcaac
tttggagctcaacccttcaaacactcgccacccgaaggctacatcgctatttccgcagct
ccaaagtcttctactcgagacaatactgtttccggaaatagacaaagtggtgtcgataat
ttgaaaccagccaacaacgctccacagaccataatcattgagccgtctcgcgaattggct
gagcaaactttcaatcagatacaaaagtttaagaaacatttggataatccaaaagtacgg
gagctcctgttgattggaggagtaaatgtcaaggaacagatttctgcattgaattcgggg
attgatatcgttgtgggaacacctggccgattagaagacctgatacaaggtggctacttg
tctttgactcattgcagattcttcgtgctcgatgaagctgatggcttattgaagcaagga
tataccgagcttattgatagactgcatagacaaattccaaaaattacatgtgatggtaga
agattgcagatgatcgtctgttcggccactttacacgccttcgaagttaaaaaactcgcg
gatcgtttgatgcacttcccaacctgggttgacctcaagggcgaagatgcagttccagag
acagtccatcatgtcgttgtcatggtggacccccagaaagacaaatcctggcagtcgatg
agaacacacattcgcacggatggagtacattacagggataatgtcaaaccaggaaataat
accgcagagacactttctgaagctgttaaaattttgaaaggagaatactgtgtcagtgcc
ataagagagcacaagatggaccgtgctattattttctgcaggactaagatcgattgtgat
aatttggagtcttatttaaagagtattggcagtaatgagtttacatgtgtgtgccttcac
ggagatcgtaagccacaagagcgaaaagcgaacttagaaaaatttaagcgtcaagaagtg
aagtttttaatttgtacggacgtcgctgccagaggattggacattaccggtcttcccttc
atgatcaacatcaccctaccagacgaaaaatcaaattacgtacaccggatcggcagagta
ggtagagctgaacgaatgggtttggctatttctttagtaagcagtgtaccggaaaaagtt
tggtatcacggagaatggtgttcctccagaggcaggaattgcagcaacacaaatctgact
gatcaaggtggctgttgcatctggtataacgagccaagatacttgggagaaattgaagat
catttgaatgtgacaattcagcaagtaggtccagatatcaaggttcctttgaacgagttc
gacggtaaagttacttacggagaaaaaaaagttaatagcggaactggataccaaaaccat
gtggcacaaatggctccagccgtatctcaattggcaggactggaatcaaaagcacagctt
atttatttgaggaggcatatgaacgttggaaaatcggtttag
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