Neodiprion pinetum (white pine sawfly): 124215441
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Entry
124215441 CDS
T08966
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124215441 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124215441 (Sf3b3)
03041 Spliceosome [BR:
npt03041
]
124215441 (Sf3b3)
03036 Chromosome and associated proteins [BR:
npt03036
]
124215441 (Sf3b3)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124215441 (Sf3b3)
Spliceosome [BR:
npt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124215441 (Sf3b3)
Complex B
124215441 (Sf3b3)
Complex C
U2 SnRNP specific factors
124215441 (Sf3b3)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124215441 (Sf3b3)
TFTC complex
124215441 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
124215441
NCBI-ProteinID:
XP_046474790
LinkDB
All DBs
Position
3:22745783..22753824
Genome browser
AA seq
1217 aa
AA seq
DB search
MYLYNLTLQRATGITHAVHGNFSGSKMQEILVSRGKSLELLRPDPNTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYIPAKNAFDKVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAIEKQKLVYILNRDPEARLTISSPLEAHKSNTLVYHTVGVDVGFENP
MFACLEIDYEEADSDPTGDAAVKTQQTLTLYELDLGLNHVVRKHSEPLEEHANFLVSVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMTCQVADLANEDT
PQLYMTCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKRRVDEEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSALGEDALVQVYPDGIRHIRADKRVNEWKAPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKMPSEVMCMALGNVAAGEQ
RSWFLAVGLQDNTVRIISLDPSDCLAPRSMQALPAAAESLCIVEMGSKEADNSEDSVSQQ
SSLYLNIGLQNGVLLRTVLDPISGDLADTRTRYLGSRPVKLFRIKMQGNQAVLAMSSRSW
LSYYYQNRFHLTPLSYESLEFASGFSSEQCPEGIVAISTNTLRILALEKLGAVFNQVSFP
LEYTPRKFVIHPDSAHLIILETEHNAYTEETKQQRRLQMAEEMQEAAGAEEAAVARELAE
AFLSEEPNEAVFGAPRAGPGLWASTLRLMAPATGQTLELHRLEQNYAALCLSLVRFANQG
DQQFLIVGVAKDYQLNPRVSNGGFLYTYKVNIDCTNLELMHKTVMDEVPLAICSYQGRVL
VGVGRMLRLYDMGKKKLLRKCENKHIPNAVVSINAVGQRIYVSDVQESVYAVRYKRQENQ
LIVFADDTHPRWVTTTCVLDYDTVATADKFGNIAVIRLASGINDDVDEDPTGNKALWDRG
LLNGASQKADTVACFHIGETVMSLQKATLIPGGSESLVYTTLSGTVGVLVPFTSHEDHDF
FQHLEMHMRSEHPPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSIEPTKQKGISGDLERT
PSEVSKKLEDVRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgtataatctaacactgcagcgcgccaccggcatcacccatgccgtccatggt
aatttttccggcagtaaaatgcaagagatacttgtgtcacgcggcaagtcgctcgagctg
cttaggcccgacccgaacactggaaaagttcacaccctcttgaccgtcgaggtttttggc
atcgtcaggtctcttatggccttcaggcttacggggggcaccaaggattacattgtcgtt
gggtccgactctggtcgcattgtcattctagaatatattcctgctaaaaatgccttcgac
aaggtgcaccaagaaacctttggcaaaagtggttgcagaagaattgtacctggacaatat
ctagccattgatccaaaaggaagagcagttatgatcggtgctatcgagaagcagaaactg
gtttacatattgaacagggatccagaagcccgtttaacgatctcgtctccccttgaagcc
cacaaaagcaacactctagtctatcacacagttggtgtagatgttggatttgaaaatcca
atgtttgcctgcttggaaattgactatgaggaagctgacagtgatccgactggagacgca
gctgttaaaactcagcaaacgttgaccttatacgagcttgatcttggattgaatcacgta
gtgagaaagcacagtgaacctctagaggagcatgcaaatttccttgtttctgttcctgga
ggaaatgatggtcccagcggtgtccttatctgttcagaaaattacctaacctacaagaat
cttggggatcagcacgatatccgttgcccaattcccagacgtagaaatgatttggacgac
cctgagcgcgggatgatcttcgtctgttcagcaactcacaaaaccaagagcatgttcttc
tttcttgcccaaactgagcaaggggatattttcaaaatcaccttggaaactgatgaagat
atggtaacggaaataaaactcaagtatttcgacacagtgcctgtcgccacaagcatgtgt
gtcctgaaaacaggtttcttgttcgtcgcctctgaatttggaaatcactacctgtaccag
attgctcatcttggtgacgatgacgacgaaccagagttcagttcagcaatgccacttgaa
gaaggtgataccttcttttttgctcccagaccactcaggaacttggttttagttgatgaa
atggacagcctatcaccgatcatgacttgtcaggtcgctgatttggccaatgaagatact
cctcaactgtacatgacttgtggtagaggtccaagatccacgctgcgagttttgcgtcat
ggactagaagtttcggaaatggcagtcagtgagctgcctggaaacccaaatgcagtctgg
acagtgaaacgaagagttgacgaagagtatgatgcatacatcatagtgtccttcgtcaat
gccactcttgtgcttagcatcggtgagactgttgaagaagtaacggactctggtttcctc
ggtacgacacctaccctcagttgttctgccctcggagaagacgccttagtacaggtatat
cctgatggaattcgtcacattagggccgacaaacgagtaaacgagtggaaagcaccgggt
aaaaagaccattgtaaaatgcgctgtgaatcaacgccaggttgtgattgccttgacggga
ggagaactggtatactttgagatggatcctactggccaactgaatgagtacacagagaga
aagaaaatgccatccgaagtgatgtgcatggcccttggtaacgtcgccgctggagaacaa
agatcctggttccttgctgttggacttcaagacaatacagtcagaatcatttctctagat
ccgtctgactgtctggcacccagaagtatgcaggccttgcctgcagctgctgagagtctc
tgcattgttgaaatggggtctaaggaagctgacaattcggaagattctgtctctcagcaa
tcaagtttatacctgaatataggtttgcaaaacggcgtacttctaagaacggttttggac
ccgatttccggtgatttagccgatacgcgaactcgatatttggggtcccggccggtaaaa
ttattcagaataaagatgcaaggcaatcaagcggtgttggcgatgtccagtcgctcttgg
ctcagctattattatcaaaatcgttttcatctgactcctttatcgtatgaaagtctggag
ttcgcgtccggtttcagttccgaacaatgtcccgaaggcatagtcgctatatccacaaat
accctgaggattctagctctcgaaaaacttggtgctgtttttaaccaagtcagtttcccg
cttgagtacacgccacgtaaatttgtgattcaccctgattctgcccatctaatcatcctc
gaaaccgagcataatgcatacactgaagaaactaagcaacagagacgcctgcaaatggcc
gaggaaatgcaggaggccgctggagccgaggaagcggctgtcgccagggagttggccgaa
gcttttctgtctgaagaaccaaatgaagcagtattcggcgctcctagagccggcccgggg
ctgtgggcctcaactttgagactgatggcacctgccactggacaaaccttggagctacat
cgattggaacaaaattacgccgctttatgtttgtcattagtcagatttgctaatcagggt
gatcaacaattcctcatcgttggtgtagcaaaggactatcagctcaatcctagagtgagc
aacggcgggtttttatacacctataaagtaaacatagactgtacaaaccttgaacttatg
cataaaactgtgatggacgaggttcctctggcaatttgttcttaccaaggacgagtcctg
gtcggagttggaaggatgttgcgtctgtatgacatgggcaagaaaaaacttcttcgaaaa
tgtgaaaacaagcacattccaaatgccgtggtatcaataaacgccgtaggtcaacgtata
tacgttagcgacgttcaggaatccgtatatgcagttagatacaaacgacaagaaaatcaa
ttaatcgtatttgctgacgatacgcatccgcgatgggtcacgacaacttgcgttcttgac
tacgatactgtcgcaacggctgataaatttgggaacattgctgtgattcgcttagcttca
ggaataaatgatgacgtcgacgaggatccaaccggaaataaagcactctgggatcgcgga
ctgctgaacggagcgagtcaaaaagccgataccgtggcgtgtttccacataggagagact
gtgatgtcattacaaaaggctacgttgatacctggaggttctgaaagtttggtgtacacg
acgttgagtggaacagttggcgtcctcgtgccattcacgagtcacgaagaccacgacttt
tttcaacatttggaaatgcatatgagatcggaacatccgccgctctgtggtcgcgaccat
ctttcatttcgatcttattattatcctgtcaaaaatgtaatcgacggtgatctttgcgaa
cagttcaattcgattgaaccaaccaaacagaagggtatatcgggtgatctggaaagaacg
ccctctgaggtctcaaaaaaacttgaggacgtcagaactcgatacgccttctaa
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