Neodiprion pinetum (white pine sawfly): 124215506
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Entry
124215506 CDS
T08966
Symbol
Hel25E
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03015
mRNA surveillance pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124215506 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
124215506 (Hel25E)
03015 mRNA surveillance pathway
124215506 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124215506 (Hel25E)
03041 Spliceosome [BR:
npt03041
]
124215506 (Hel25E)
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124215506 (Hel25E)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124215506 (Hel25E)
Spliceosome [BR:
npt03041
]
Complex C
Other components
EJC/TREX
124215506 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124215506 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124215506
NCBI-ProteinID:
XP_046474923
LinkDB
All DBs
Position
3:376666..383981
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AA seq
424 aa
AA seq
DB search
MADNEDLLDYEDDEQTEQVVDGSGDISAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENVVYVLVMCHTR
ELAFQISKEYERFSKYMPAVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFVLDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDEGDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgaagacttgttagactacgaggatgatgagcaaaccgaacaagtggta
gatggtagcggagacatatctgcaaaaaaagaagtcaaaggtacatatgtatcgattcat
agcagcgggtttcgtgatttcctcctcaaaccagagatacttcgtgccattgtcgactgt
ggttttgagcatccatccgaagtgcaacatgaatgcatcccacaagcagttctgggcatg
gacatcctttgccaagccaagtctggtatgggaaagactgctgtttttgtgctcgcaact
ttacaacagttggaactaacggagaatgtggtttacgttttggtcatgtgccacacccgt
gaattggcttttcaaatcagcaaggagtacgagagattcagtaaatacatgccagctgtc
aaggtgggtgttttctttggaggattaccgatacaaaaagatgaagaggtactaaaaaat
acttgtcctcatatcgtggtgggaacacctggtcgtattctcgcacttgtgcgcaacaag
aaactcaatctgaaacacctgaaacacttcgttttagacgagtgcgataagatgctggaa
ttactcgatatgcggcgtgacgttcaagagatattcaggagcactccgcacggcaaacaa
gtgatgatgttcagcgcaaccctgtccaaggatatacgtccagtctgcaagaagttcatg
caagatccgatggaggtgtatgtggacgacgaggccaaactcactttacacggtctacaa
cagcattatgtcaagctgaaggagaatgagaagaataagaaattgtttgaactgttggat
gttctagagtttaatcaggttgtgatattcgtgaaatccgtgcaaagatgcatggccctg
gctcaattgctgacagagcaaaactttccagcaattggtattcatcgaggaatgacccag
gaggaacggctttcaagatatcaacaattcaaagattttcaaaagcgtatcttggttgct
acaaatttatttggtcgtgggatggatattgaaagagtcaacatagttttcaactacgat
atgcctgaagactccgacacttaccttcacagggtagctcgtgcaggacgatttggtaca
aaaggtcttgctattacattagtcagcgatgaaggagatgcaaaaattttgaacgacgtt
caagaaagattcgacgtcaacatcactgaacttccggatgaaattgatctcgcctcatac
attgaaggacgataa
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