Neodiprion pinetum (white pine sawfly): 124215831
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Entry
124215831 CDS
T08966
Symbol
Prp40
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124215831 (Prp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npt03041
]
124215831 (Prp40)
Spliceosome [BR:
npt03041
]
Complex A
U1 snRNP components
U1 related factors
124215831 (Prp40)
Complex B
124215831 (Prp40)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
RhoGAP-FF1
SL4P
HVO_2833_C
Motif
Other DBs
NCBI-GeneID:
124215831
NCBI-ProteinID:
XP_046475595
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Position
4:complement(21410646..21414762)
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AA seq
851 aa
AA seq
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MASSDGIPPPGTVAGFPSVPPSMPPGFVPPIMPGTPYIPAPGLPPGPPSMMPPQFSIPPP
GFSFPISAGPPPDINVIAAPPQISGSPAVPTSTTSTLEPATVTPSIPTTEKKSEWTEHKA
PDGRTYYYNSATKQSLWEKPDELKTPSELLLSQCPWKEYKSDNSKIYYHNVTTKESRWTI
PPELEELKAKLAAEEAGTVASVAVVTAAAVAGSAIVPSSTPNTALVPPVMHALSPKLVTP
QVSTPEASCKSAIEQAMAATLAAINIPTPPTKPDDDSNSTKGSANGSRNSTPEPKVQFKD
KKEAIEAFKELLKERDVPSNATWEQAVKMIQNDPRYPQMKKLNERKQAFNAYKTQRLKEE
REQERLRLKKAKEDLEQFLLTHEKMTSNTKYYKCEEMYGNLELWRSVGDSDRRDIYEDVI
FNLAKREKEEAKVMKKRNTKRLALVLDAMTDVTYKTTWQEAQALLLQHSAFAEDADLLAM
DKEDALLVFENHIRQLEKDEEEEKEREKKRRKRLERKNRDGFISLLDDLHEQGKLTSMSL
WVELYPMLSADIRFSAMLGQPGSTPLDLFKFYVEDLKSRFHDEKKIIREILKDKSFDVQV
NTTFEEFATVVCEDRKSATLDAGNVKLTYNLLLEKAEAREKERIKEETRKFKKLEIGFKN
LLKTLDVDYQMSWDDVRAKIEGESDFKAITLESERVRIFKEYQHEIEESCSHHHIRSKKK
KTKKPKRKSRSRSHSESDTSEKGVKKKTQKSRSMSPPSKSDSSESDVKKSKRKKSKKKRG
RSRSRSYSRLPSSEESPDRKRKDEKHRRTSAHSENGSVNEGAAHHHELSEDELEKQRAQL
LRELQMQQEDN
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcatctagtgacggcattccgccacctgggactgtagctggctttccttcagtccca
ccgagcatgccaccaggttttgtgccgccaatcatgcctggcaccccttatataccggct
ccagggttgcccccaggtcctccaagcatgatgccacctcaattttctattccgccacct
ggtttcagttttccgatctccgctggacctcctcctgatataaacgttatagctgcgcct
cctcaaataagtggatcaccagctgtcccaacatcaacaacatcgacacttgagccagcc
acagtaacgccatcaattccaacaacggaaaaaaaatccgaatggacagagcacaaagct
ccagatggtcgtacatattattataatagtgcaacaaagcaatcactttgggaaaagcct
gatgaattgaaaactccaagtgaattactactatctcagtgcccatggaaagagtacaaa
tctgacaatagtaaaatttactaccacaatgtcacaaccaaagaatcaaggtggactata
ccacctgagcttgaggaattgaaggcaaagcttgctgctgaagaagctggcactgttgct
tcagttgcagttgttactgctgctgccgttgccggctctgctattgtcccaagcagcact
ccgaatacggctcttgttccacctgtgatgcatgcgttgtcgccaaaactcgtgacacca
caagtaagcactcctgaggcgagctgtaaatcggcaatcgaacaggctatggcggcaacc
ctcgccgccataaatattccaactcctccgacaaagccagacgacgatagtaactcgacg
aaaggttctgccaatggaagtaggaacagcactcctgaacctaaagtgcaatttaaagat
aaaaaggaagcgatcgaagcattcaaggagctgctgaaggagcgagatgtaccctctaat
gctacttgggaacaggcagtgaaaatgattcaaaatgatccaaggtacccacagatgaag
aaattgaacgagagaaaacaagctttcaacgcttacaaaactcaacggctcaaagaagaa
cgtgaacaggaaagactgaggctgaaaaaagccaaggaggacttagaacagtttttattg
actcacgagaagatgacgagtaatacaaaatattacaaatgtgaggagatgtatggtaac
ttggagctttggcgttcggttggagactcggatcgtcgtgacatttacgaggatgttata
ttcaacttggctaaacgtgaaaaagaggaagcaaaggttatgaagaaacgtaacaccaaa
cgactcgcccttgtgttggacgccatgacagacgttacatacaaaaccacttggcaggag
gcacaagcattgctgcttcagcattctgcgtttgctgaagacgcggacttgttggctatg
gataaggaggatgctctgctagtttttgaaaatcatattcgtcaattggagaaagatgaa
gaggaggaaaaggagcgggagaaaaaacgaaggaaacgattagagaggaaaaatagggac
ggatttataagtttattggacgatttacacgagcaaggcaaactgacatccatgtcactc
tgggtggaactttatcctatgctatccgccgacatacgattttcagccatgcttggtcag
ccgggatcaacgccattagatctgttcaaattttacgtcgaagatttaaagtcacgtttc
cacgacgaaaagaaaataattcgcgaaattttgaaggacaaaagttttgacgttcaggtt
aacactacatttgaagagtttgcgacggtagtttgcgaggacagaaaatcggcgactctg
gatgctggaaatgtcaaactcacgtacaatctgttgcttgaaaaagcagaggcaagggaa
aaggagaggatcaaagaagaaacgaggaaatttaaaaagcttgaaattggatttaaaaac
ttgcttaaaaccttagacgttgattatcagatgtcgtgggacgatgttagagccaaaatc
gaaggggaatccgatttcaaagccataacactcgagagcgagagagtaaggatattcaag
gagtatcagcacgagatcgaggaaagttgtagccaccatcacataaggagcaaaaaaaag
aaaacgaaaaaaccgaaaagaaagtcacggtctcggtcccatagtgagtctgatacaagt
gaaaaaggggttaagaaaaaaacccaaaaatcacgatctatgagtcctccgagtaaatcg
gacagttctgaatctgacgtgaaaaaatccaagcgcaagaaaagtaagaagaaaagaggc
cgcagccgttcacgttcctattcaaggctaccatcttcagaagagtctcctgaccgaaaa
cgtaaggatgaaaaacatcgacgaacgtctgcccacagtgaaaacggttcggttaacgag
ggtgctgctcatcaccacgaattatccgaggatgaattagaaaagcaaagagcacaacta
ttgcgcgaacttcaaatgcagcaggaagacaattga
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