Neodiprion pinetum (white pine sawfly): 124216056
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Entry
124216056 CDS
T08966
Symbol
RfC3
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03030
DNA replication
npt03410
Base excision repair
npt03420
Nucleotide excision repair
npt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124216056 (RfC3)
03410 Base excision repair
124216056 (RfC3)
03420 Nucleotide excision repair
124216056 (RfC3)
03430 Mismatch repair
124216056 (RfC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npt03032
]
124216056 (RfC3)
03036 Chromosome and associated proteins [BR:
npt03036
]
124216056 (RfC3)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124216056 (RfC3)
DNA replication proteins [BR:
npt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124216056 (RfC3)
DNA Replication Termination Factors
ELG1-RFC complex
124216056 (RfC3)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124216056 (RfC3)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124216056 (RfC3)
Check point factors
HRAD17(Rad24)-RFC complex
124216056 (RfC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RuvB_N
AAA_22
AAA_11
AAA_14
AAA_assoc_2
ResIII
RCF1-5-like_lid
AAA_16
DUF815
AAA_24
DEAD
AAA_5
AAA_30
AAA_7
TIP49
AAA_19
ATPase_2
Mg_chelatase
PhoH
BrkDBD
AAA_3
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
124216056
NCBI-ProteinID:
XP_046476082
LinkDB
All DBs
Position
4:complement(2978363..2981428)
Genome browser
AA seq
328 aa
AA seq
DB search
MTQETPAVANLPWVEKYRPTKLEELISHEEIIKTINKFIKEDQLPHLLFYGPPGTGKTST
ILASAKQLYTPAQFTSMVLELNASDDRGIGIVRGQILNFASTRTIFKHGFKLIILDEADA
MTNDAQNALRRIIEKYTENVRFCVICNYLSKIIPAVQSRCTKFRFGPLAPEQIMPRLEYV
IDKENLTVEEDGKKALMTLSGGDMRKVLNVLQSTWLAYGSVTEETVYSCVGHPLPKDITS
IANWLLNENYVLAYCKIQDLKIKKGLALQDILTELHSFVNKIEFPDGILINLVVKMADIE
RRVATGCTEAVQLNALVAAFQCAREIQC
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaggaaacaccagcagttgctaatcttccatgggtcgaaaagtatcggccaaca
aaattagaagaacttatatcgcatgaggagataataaaaacaatcaacaaatttatcaaa
gaggaccagttacctcatcttttgttttatggaccaccaggaacagggaaaactagtacc
atactagcatcagccaaacagctctatactccggctcaatttacttcgatggtattggaa
ctgaacgcttccgacgacagaggaatcggtatagttagaggacaaattctgaactttgcc
agcacgcgaacaattttcaaacacggatttaaattaattattcttgatgaggcggatgcc
atgacaaacgacgctcaaaatgctcttcgcagaatcattgaaaagtatacagagaacgtc
cgattttgcgtgatctgtaactatctaagcaagattattccagcagtgcaatcgcgttgc
actaaatttagatttggtcctctggcacccgaacaaataatgcctcgtcttgagtacgtg
attgataaggaaaacctaacagtggaagaagacggaaaaaaggcgttgatgacgttaagc
ggaggagacatgaggaaagtcttgaacgtactccaaagtacatggcttgcttatggatcg
gtaactgaggaaacggtttactcttgcgtcggacatcctcttcccaaggacataacgagc
atcgccaattggctactgaatgaaaactacgtactcgcctattgcaaaatccaggacttg
aaaatcaagaaaggattagctttgcaagatattttaacagagcttcattcctttgtaaat
aaaatcgagtttcccgatggtatactcatcaatttggtggtgaaaatggctgatatagag
cgaagagtcgcgactggatgcactgaggctgtgcaattgaatgctcttgttgcagcattt
caatgtgctcgagaaatacagtgttaa
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