Neodiprion pinetum (white pine sawfly): 124216558
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Entry
124216558 CDS
T08966
Symbol
Dcr-1
Name
(RefSeq) endoribonuclease Dicer-1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npt03036
]
124216558 (Dcr-1)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124216558 (Dcr-1)
microRNA pathway
RISC loading complex
124216558 (Dcr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
ResIII
Motif
Other DBs
NCBI-GeneID:
124216558
NCBI-ProteinID:
XP_046477130
LinkDB
All DBs
Position
4:complement(28855954..28866618)
Genome browser
AA seq
1932 aa
AA seq
DB search
MAFPLNDQVHTKSFSPREYQVELLYAALESNIIVCLGKNSEQIFIVIKLIQELATNNRRS
PSEGGKRSVYILRDTDRCLTKAVYIQQLTDLRVLICDSETWPEFDRKFAESQVIVTTSHV
CADLLNQNKIYPSQINLAIVDQCHKAVNDEKLKFVLQKFNVSNGPRLIGFAAPVFNLTRQ
PGRLEAEVELLEKTFHCRIETASDIVSVLRYSPKPKEYIVEYKCGEYEELNQTLENCAMH
AMNFLCDHRYDPTEIYNDEFLEDIQKIPDPKQEPCSMIEDFLYVLQTFGAWCANHAALAL
LIQAEKLKVKTPYERHYLLFNVVVSLFIKIRAICESEFENLSEREKLYKFSTPCVHRLLH
ILKCYAPSSKKELTIPDNKLSNGHSVSACKKDIDTGKDGLQQSKYIGNVKKLRTGIKRPP
KSRYPRTQIDPDLLCGVIFVDKGFTAKILFYLLNDACKYDKDLQFLSPLYTIEKNPEGTS
SAHDMEVQHRKQEEVLKSFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKSYQSYVQC
KGRARATDALHVLFVSEKISNECIQKLAEYHYIEQTLLSKCANKEPSEEEELLADKYGDL
LPQYKPLSIEGSPSVTFNSAISLVNRYCAKLPSDTFTRLTPEWIIEPTIIDNKTMYVCSI
RLPINSPVKYTVTSYPMPNSAMARRLAALQLCIDLHRANEIDDYLLPIGKENFKANPEDA
EAPPLPDETKAEFSEARPGTTKRRQYYYKKTAEVLTDCRPVLMTKSFLYHISMVLTCPLP
EEQNTRGRRIYPPEESAIGFGILTLKKIPKLCPFPIYTRSGEVHVKLELSKETVTLNADQ
IERVAAFLKYTFTNVLRLQKYLMLFDPNASENSYFIVPVKTVITENGPDVNVDWEFLERI
YENRNAIPNEVSEGDRNQFKFDATKYHDAVIMPWYRNKDQPQYFYVAEICANLNPKSSFP
GADYSTFEEYYLKKYNIQIQNLNQPLLDVDHTSARLNFLTPRYINRKGVALPTSSEETKK
AKRENLEQKQILVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAKMINLG
QQHLDPDFEWLPLDFGWSLSEVLNKSKDSSKLIEMKSDAKTTKSVIPKLTDSMSVAEEIE
KDISSKHDSSVDKDNEMEIGTWSNEMAINAVELNNENIFSPNLTVLQDTFSWNDIRYGSP
ACDSDLDAYDTDDTSSEAMGDFSDESDEGGGGLRIAFMGDNVAEAVEDENRIRKNEINKR
ILDLLELERSYDEDVWQCSNDIQNGLIQQHETAQNIETSRTKEEILTNGMFIRSDQEIVL
KRRSSAVQNKTDLLPSEYYEYISQVSKRFTHEVINTQPLRQPIKKQSNNSQILEEADDSF
FSFDYQPNLNGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYSITTYLYCTYDN
IHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPREIEQALIE
SGVPSNLWNQADIPVLRAVNRNEISELVRETEHKLEIMRTELIRSSNDSATDFEKLRCFI
PYNLITQHSIPDKSVADCVEALIGAYLIACGPRGAFLFMAWLGIHVLPFQKVSIISTNEP
LDRPPGSSSYIKEINENGETCWTQIRYGNLDEPQCPLLRHVPDPEKELSLMLDGYSDLEE
SMGYKFREPSYLLQAFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDTRQHSPGA
LTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNVVIDRFVRIQEENGHSISEEYYLIA
EDECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWRVYYKIMRSEIEQFSTNVPKS
PIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKK
LKKMQRHQREKL
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggcatttccattaaatgatcaagttcatactaagtctttctctcctagagaatatcaa
gtggagctcctctacgcagctttagagagcaacataatagtttgtctaggaaaaaattct
gaacaaatatttattgttatcaaactaattcaagagttggcgactaacaacagaagatct
ccgtcagaaggaggcaagcgctcagtatacattctaagagatacagatcgatgtttaacc
aaagctgtatatatacaacaattaacagatttacgcgtacttatctgtgattctgagaca
tggccagagttcgatagaaaattcgctgaaagtcaggtgattgttactacatcacatgtt
tgtgcagatctgttgaatcagaataaaatttatccaagtcaaataaatttggcaattgta
gatcaatgccacaaagcagtcaatgatgaaaagctaaagtttgttttacaaaaatttaat
gtctctaacggtcctcgactaattggttttgctgcaccagtttttaatctaactcgtcag
ccaggacgactggaagcagaagttgaacttttggaaaaaacctttcattgtagaattgaa
acagccagtgatattgtatcagtattaagatatagtccaaaaccaaaagagtacattgta
gaatacaaatgtggcgaatatgaagaattaaaccagactctggagaactgtgctatgcat
gctatgaactttttgtgtgatcatcgctatgatcccactgaaatttacaacgatgagttc
ctcgaggacatacagaagattcctgatcctaaacaggaaccttgctcaatgatagaagac
tttttgtacgtacttcaaacattcggggcttggtgcgccaatcacgctgctctagctttg
ctaattcaagcagaaaagctgaaagtaaaaaccccttatgagcgacactacttattattc
aacgttgtggtttccttgtttattaaaataagagctatttgtgaaagtgaatttgaaaat
ttgagcgaaagagaaaaattatacaaattctccactccatgtgttcatcgactattgcat
atactcaagtgttatgccccatccagcaaaaaagaattgactatcccagacaacaaactg
agcaatggacacagtgtatctgcctgcaagaaagacattgatactggaaaagatggcctc
caacaatcaaaatacattggaaatgtcaaaaagctacgaactggtattaaaagacctcca
aaatcacggtatccacgtactcaaattgatccagatctgttgtgcggagttatttttgtg
gataaaggatttacagcaaaaatattattttatctattgaatgacgcttgtaagtatgac
aaagatttacaatttctctctccactttatacaattgaaaagaatcctgagggaacaagc
tctgctcatgacatggaggttcaacatcggaaacaagaggaggttttaaaaagcttccga
atacacgaatgtaatttattaattgctacatcgatattggaggagggaatagatatacca
aaatgcaattttgtgatgaggtatgatttccctaagagctatcagtcttacgtgcagtgc
aaaggccgagctcgggcaactgatgcccttcatgtgcttttcgtgagtgaaaaaatatcc
aatgagtgtatacaaaagttagctgaatatcactatattgaacagactttattatcaaag
tgcgccaataaggaaccttcggaagaagaagaattattggcggataaatatggtgatttg
ttacctcagtacaaaccattgagtattgagggttcacctagtgttacttttaattctgca
atatctttggtaaacaggtattgtgccaagctgcctagtgatacattcactcgattaaca
ccagaatggataattgaaccaacaattattgacaataaaaccatgtatgtttgttccata
cgtttgccaataaactcgcctgtgaaatacacagtaacgtcatatccaatgccgaatagc
gcaatggctcgtcgcttggctgcacttcaactctgcatagatcttcatagagctaatgaa
attgatgattatttgttgccaattggtaaagaaaattttaaagcaaacccagaagatgct
gaagcccctccactaccagatgaaacaaaagctgagttttctgaagcgcgcccaggtacc
actaaacgaagacaatactactacaaaaagactgccgaagtgttaacagattgcaggcct
gtactgatgacgaaatcgtttttatatcatattagtatggtactcacttgccctttacct
gaggaacaaaacacaagaggtcgtcgaatatatcctcctgaagagtcagctataggattt
ggcattctaactctaaaaaaaataccaaagctatgtccattcccaatatacacgagatcg
ggagaggttcatgtaaaacttgaattaagtaaggagacggttacattgaatgctgatcaa
attgaacgagtagcagccttcctcaagtacacattcacaaatgttctaaggcttcaaaaa
tatctgatgctatttgatccgaatgcttcagaaaattcatactttattgttcctgtaaaa
acggtcatcacagaaaatggcccggatgttaatgtggattgggagttcttagaacgtata
tatgagaacaggaatgcaataccgaatgaagtgtcggaaggagatcgcaatcaattcaaa
tttgatgcaactaaatatcatgatgctgttattatgccatggtatagaaataaggatcag
ccacaatacttttatgtagcggaaatttgtgccaacttgaatccaaaatcttcttttcct
ggggctgactatagtacatttgaggagtattatttgaaaaaatataacatacagattcag
aatctgaatcaaccgctacttgatgtagatcatacttcagctaggctcaattttctcaca
ccaagatacatcaatcgtaaaggtgttgcattaccaactagtagtgaggaaaccaagaag
gcaaagagagaaaatttggaacaaaaacaaatattggtagcagagctttgtgctattcac
ccatttcctgcctcattatggagacaagcggtttgtctgccatgcatactttatagaatc
aacgcacttcttcttgctaatcaaatacgatgccaggtagcaaaaatgataaatttgggg
cagcaacatttagatccagactttgaatggttgccattagactttggttggagtctatcg
gaagtcttgaataaatcaaaggacagtagtaaattgattgaaatgaaaagtgatgctaaa
actacgaaatctgttatacctaaattgacagacagtatgtccgtggcagaagaaattgag
aaagatatctcttcaaaacatgacagttccgtggataaagataatgaaatggaaattgga
acgtggtctaatgaaatggctataaatgcagtggaattgaataatgaaaatattttttca
ccaaatttaacggtgctacaagataccttttcttggaatgatattaggtacggctcacct
gcctgtgattctgatttagatgcttacgatactgatgacacctctagtgaagcaatggga
gatttttcagacgaaagtgatgaaggtggtggtggtctacgcattgcttttatgggagat
aatgttgcagaagctgtggaagacgaaaatagaatccgtaaaaatgaaattaataaaaga
attttggatttattagagttggaaagaagttatgacgaggatgtttggcagtgttccaat
gatattcagaatggattaattcaacaacatgagacagctcaaaatattgaaactagtcga
accaaagaagaaattctgacgaatggaatgtttattcgtagcgatcaagaaatcgttttg
aagaggcgctcatcagctgtacaaaataaaactgacttactgccgtctgagtattatgaa
tacatctctcaggtttcgaaaagatttacacatgaagttattaatacgcagcctctgagg
caacccattaagaaacaatcaaacaactctcagatattggaagaagcagacgattctttt
tttagttttgattatcaaccgaatctaaatggtcaccctggaccaagtccgagtttaatt
cttcaagcgttgacaatgtcaaatgctaacgatggtattaatttagagaggctcgaaact
attggagattcttttctaaaatattcaataactacatacttgtattgtacatatgacaat
atacatgaaggaaaattgagtcacctgagatcaaaacaagtgagcaatttaaatttatac
agattaggccgtcgaaaagtattgggtgaaagtatgatagcaactaaatttgaaccgcac
gataattggttaccaccatgctattatgtaccacgtgaaatagaacaagcattaatagaa
tctggagtgccgtcaaatttgtggaaccaagcagatattccagttctcagagctgtaaat
cgaaatgaaatatccgaacttgttcgagaaacggagcataaactcgagattatgcgaact
gaactgattcgaagcagcaatgattctgctaccgattttgaaaagttacgatgtttcata
ccatataatctaattacacagcatagtataccagataaaagtgtcgctgactgtgtggaa
gctttaataggagcatatttaatagcgtgtgggcccagaggagctttcttattcatggcc
tggctaggaattcatgtcttaccattccaaaaagtttctatcatatccacaaatgaacca
cttgacagacctccgggtagttcgtcctatattaaggaaattaacgaaaatggagaaaca
tgctggacacaaatacgctatggaaacttagatgagccacagtgcccacttttgaggcat
gtaccagatcctgaaaaggagttgagtctgatgctggacggttatagcgatcttgaagaa
agtatgggctacaaatttcgtgagccgagttacttattgcaagcattcacccatgcatcg
tatcagccaaataaattgacagactgttaccaacgcttagaatttcttggagatgcagtt
ttagattatctgataacaagacatttgtatgaggatacaaggcaacattcccctggtgct
ctaacagatttgaggtcagctttggtaaataatacaatatttgcttcgctggcagtgaga
tgtggatttcataaatatttccgccatctatcaccaggtttaaatgtggtcattgacaga
ttcgtcaggatacaagaagaaaatggtcactctatcagtgaagaatattatttaattgct
gaagatgaatgcgaagaggcagaagacgttgaagttccaaaggctttaggtgatgttttt
gaatctttggcaggagcaatttatttagacagtggtatgtctcttgacgctgtttggagg
gtgtattataaaatcatgaggtctgaaatagaacaattcagtacaaacgtaccaaaatct
ccaataagagaattattagagttggaacctgaaacagcaaagtttgggaagcctgaaaaa
ctagctgatggtcggcgtgtaagagtcacagtagatgtgtttgggaagggttctttcaaa
ggaataggaagaaattatcgcattgctaaatgtacagctgcaaaatgtgcacttaaaaaa
ctaaaaaaaatgcaacgacatcaaagagaaaaactgtga
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integrated database retrieval system
