Neodiprion pinetum (white pine sawfly): 124216998
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Entry
124216998 CDS
T08966
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124216998
03036 Chromosome and associated proteins [BR:
npt03036
]
124216998
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124216998
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124216998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_9
HHH_3
Tex_YqgF
Tex_central_region
Spt6_S1
OB_RRP5_4th
HTH_10
S1_RRP5
Tex_N
Motif
Other DBs
NCBI-GeneID:
124216998
NCBI-ProteinID:
XP_046478153
LinkDB
All DBs
Position
4:2771009..2780539
Genome browser
AA seq
1766 aa
AA seq
DB search
MADFIDSEAEESEEEEELDHNEKKKLKKIKAVEESDEDDEDDEDRFQGELEDLIDDNPIE
ESEGEDSDGSGGSKKRKKSDDEDFDDRLEDEDYDLIEENLGVKVERKRFKRLRRIQDEES
EEEQEHEAVEERDAIANELFEGSGDEDERRSERSHRPEPETFDEEGSDGDYSEGDDFIVD
DDGRPIAERRRKKKPIFSDAALQEAQDIFGVDFDYDEFGKYGEEDYEEEEEEDEEDEYVD
EDGDGERPRRPKKQPKKKTTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIPERMQLRSVP
VVAVPEGSDELDLEAEWIYKQAFCRPSVSVQDSHLNAEAKERARKGPQTVGKIKKALDFM
RNQHFEVPFISFYRKEYVLPELNINDLWKVYKFDVKWCQLRQRKENLLQLFEKMRNYQLD
EIMKNAEAPLPEGLRLIKDDDIERLRNVQTSEELNDVHHHFMLYYSHEIPPMQEAVRKKE
REARAAARAAKRRQQIADAEENGEDPPPEDDVEADEEEEPDETLKQAVRTGPYTICRKAG
LDGLAKKFGLSPEHYAENLRDNYQRHEVDQEPTEPSVVANDFCGKKFKTPEEALKATQLM
VAIQLAREPLVRKCVREMYMERAKLSVTPTKKGIKEIDENHPIYTMKYLKDKPVRDLVGD
QFLKLSIAEEDKLITISLSDSIEGNTSNNYVDEMKQLYYRDEFSKNVQDWNALRVGSVEM
ALTKMVIPELKKELKANLIAEAKECVMRACCRKMYNWLKVAPYSCDFPEEEDEEWDTSKG
LRVMAVSYVPDYSKAAFTCLVAPDGECTDYLRLPHLMKKKNSFREDEKAMKEADLLAIRN
FIATKKPHVVVVSGTSREATMVVADIKECISNLVEEEQFPNIQIEVCDNELAQIYSNSNK
GVSEFRDYPELLREAISMARRMQDPLVEFSQLCTADEEILCLKYHPLQDQLPKEDLLENL
YLEFVNRVNEVGVDVNKAVQQAYAGNLVQFVCGLGPRKGQALIKMLKQTNQRLENRTQLV
TACHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDALEYDD
EDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCITLYDIRAELNSRYKDLRVP
YQSLSAEKLFDVLTKETPETFYIGKMVEATVCGITHRKPQGEQLDQANPVRNDETGLWQC
PFCLKNDFPELSEVWNHFDAGACPGKATGVRLRLENNISGYIHIKNLSDKHVANPEERVR
IGQIIHCRIIKIEVDRFSVECTSKSSDLADKNHEWRPQRDPFYDMEAEQKDQQVEEDAKK
AKQRQTYIKRVIVHPAFHNISFAEAEKFMQNMDQGEAIVRPSSKGADHLTVTWKVTDKIC
QHIDVREEGKENTFSLGQSLWIGNEEFEDLDEIIARHVNPMAAHARDLLYFKYYKDTEGG
LKDKAEELLKDEKKKNPGKIHYFISAAKNYPGKFVLSYLPRVRCRHEYVTVTPEGFRFRG
QMFDNVNSLFRWFKEHFRDPVPGQGTPSTPRGAMTSRTPYHNTPGVNMSSMNQEAIQRVA
QNLPHHMLHSLSQVANQTPHHYPPHTPGAASAGPYGGMHTYPNTPYTPSGQTPFMTPYQT
PHHTPHHGQPTPRYGQQTPNHHQGQFVHPGPTTVTSAHHRTTPSHRPTPQMPTLAGDPMD
WKKAAEAWAKLKQITPRISGNSTPRYEDSRKTPRGYDDGSGRATPRNRPPTARTPSYKSP
RGTPHTNSSPRSMSLSGDGTPLYDEN
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcatcgactcggaggcggaagaaagtgaggaggaagaggagttagatcac
aatgaaaagaaaaaactaaagaaaattaaagctgttgaggagagtgatgaagatgatgaa
gatgatgaggaccgtttccaaggagaactggaggatcttattgatgataatcctatcgaa
gagagcgaaggagaggacagtgatggttccggtggttctaaaaagcgtaaaaagagtgat
gatgaagactttgacgatcgactggaagatgaggactatgatcttattgaggaaaacttg
ggagtcaaagtggaaaggaaacgatttaaacgtctacgtcgaatacaagatgaggagtcg
gaggaagagcaggagcacgaagcggtagaagaacgggacgctatcgcaaatgaattattc
gaaggatctggtgatgaggatgaaagaagaagcgaacgtagccataggcctgaaccagag
acttttgacgaggagggttccgatggagattattctgagggtgatgattttattgtcgac
gatgatggaagacctattgctgaaaggcgaagaaagaagaaaccaatattttcagatgcc
gcgttacaagaagctcaagatatttttggggtagactttgactatgatgagtttggaaag
tatggggaagaggattacgaagaggaagaagaagaggatgaggaagatgaatatgttgat
gaagatggtgatggggaacgaccgcgtcgtccaaaaaaacaacccaaaaagaaaacaaca
cggaaaagtatctttgaaatatatgaacccagcgagctcaagcgaggacattttactgac
atggacaatgagattcgtaatactgatatacctgagcgaatgcaactacgttcagtacct
gttgtcgcagtcccagagggatcagatgaactggatttggaagcagagtggatatataaa
caggcattctgtcgtccgtcggtctccgttcaagattctcatttaaatgctgaggctaag
gaaagggcacgtaagggaccacagacagtaggaaagatcaaaaaagccttggactttatg
cgtaatcaacacttcgaggttccgtttatatcattttatcgaaaggaatacgttttacct
gaactaaacataaacgatctatggaaagtatacaaatttgacgtgaaatggtgtcagctt
cggcaaagaaaagaaaacttgttacaactgtttgaaaaaatgagaaattatcaactggat
gaaatcatgaaaaacgctgaggctcctctgccagagggactgcgactgataaaggatgac
gatatcgagagattgcgaaatgttcaaaccagcgaagaattgaacgacgttcatcatcac
ttcatgttgtattacagccatgagattccacctatgcaagaggccgtccgcaagaaggaa
agagaagcacgagctgcagcaagagcggctaaaagaagacagcagatagctgatgctgaa
gaaaatggggaggatccacctccagaagacgatgttgaagctgacgaagaagaggaacct
gacgagacgctgaaacaagctgtcagaactgggccttacactatttgtagaaaggctggt
ctggacggtcttgccaagaagttcggtttgtctccagagcattatgcagagaatcttcgt
gacaattaccaacgtcatgaagttgatcaggaaccaacggaaccttctgtagttgccaat
gacttctgtggtaagaagtttaagactccggaagaagccttgaaggccacacaactgatg
gttgccattcagcttgcaagggaacctcttgttcgcaaatgcgttcgagaaatgtatatg
gagagagcaaaactgtctgtcacacctaccaaaaaagggataaaagagattgatgaaaac
catcccatatatacaatgaagtatctgaaagacaaacctgtaagagatcttgttggcgat
caattcctcaaactaagtattgccgaagaagataaactcatcaccatttcactcagtgat
tcgattgagggcaatactagtaacaattatgtagacgaaatgaagcaactttattacagg
gatgaatttagtaagaatgttcaagactggaatgcattgagagtagggagcgtggagatg
gctttaacgaaaatggtcattcccgaattaaagaaggagttgaaggcgaatctaattgca
gaagctaaggaatgcgtgatgcgagcgtgctgccgaaagatgtataactggctcaaagtg
gctccgtatagctgtgatttccctgaggaagaagatgaagagtgggatacgagcaagggg
ttacgtgtgatggctgtatcttatgtgcccgattactccaaagcagcattcacatgtctt
gttgcacctgacggcgagtgtacagattatctgcggctgccacatttaatgaaaaagaaa
aacagtttcagagaggatgaaaaagctatgaaggaagctgatttgctggcaattcgtaat
tttattgcaacaaagaaaccgcacgttgttgttgtgagtggtacatccagggaggcaaca
atggtcgttgctgatatcaaagagtgtataagtaacctggtggaagaagaacaatttcct
aatattcaaatagaagtatgtgacaacgagctcgcccagatctactcaaacagtaacaaa
ggagtgtcagaattcagggattatccagaattacttagagaagctatttcaatggcacgg
cgtatgcaagatccgttagtggaattttcacagctatgcacagcggatgaagaaatcttg
tgtctcaagtaccatcctttacaagatcaactccctaaggaagaccttttagaaaaccta
tatttagaattcgttaatcgagtaaatgaggttggtgtggatgtgaacaaagcagtccaa
caagcttatgctggcaacttggtacaatttgtctgcggcttgggacctcgaaaaggacag
gccttaattaaaatgctaaagcaaactaatcaacgattagagaatagaacgcaattggtc
acagcttgtcatatgggccctaaggttttcattaattgcgccggttttatcaagatagac
acaaatagtttgggagacagtactgaagcatatgtggaagtgcttgacggctcgcgtgtt
catccagagacatatgaatgggccagaaaaatggcagtagacgcactagagtacgatgat
gaagatgcaaatccagcaggggcattggaggaaatcttagaatcgccggaaagattgaag
gatcttgatcttgacgcatttgccgaagaattagaaagacaaggttttggtaacaaatgc
ataacactgtatgacatcagggcggaattaaatagcagatacaaagaccttagagtgcca
tatcaatctctcagtgctgaaaaattgttcgatgtattgaccaaggagacaccggaaacg
ttctatatcggcaaaatggttgaagccaccgtatgtggcataactcacaggaaacctcaa
ggtgaacaactagatcaagcaaatccggtacgaaatgatgagacaggtctttggcagtgt
ccattctgtctaaagaatgatttccctgagttgtcggaagtatggaatcactttgatgct
ggagcctgcccaggaaaagctaccggtgtcaggttgcgcttggaaaataatatatcagga
tatattcacatcaagaatctgtctgataaacatgtagcgaatcccgaggaaagagtcaga
attggtcaaatcattcattgccgtataatcaagattgaggtcgacagattcagtgtagaa
tgtaccagtaaaagcagtgatcttgctgataaaaatcatgaatggagaccgcaaagagat
ccgttttatgatatggaagcagaacaaaaggatcaacaggtagaagaagatgcaaaaaaa
gcaaaacaacgacagacttatataaaacgcgtcattgtacatccagcatttcataatatc
agttttgccgaagctgagaaattcatgcaaaatatggatcagggtgaagcgatagttcga
ccaagtagcaaaggtgcagatcacctcacagtaacgtggaaagtgactgacaaaatctgt
caacatatcgatgttcgagaagaaggcaaagagaataccttctcgcttggccaaagttta
tggatcggtaacgaagagtttgaagatttggacgaaatcattgccagacatgttaatccg
atggcagctcatgctagagatttgttgtactttaaatattataaggatacggaaggtggc
ttgaaggacaaagcagaagagttattgaaagatgagaagaaaaagaaccctggaaagatt
cattatttcatatccgccgcaaagaattaccctggaaaatttgtactgtcttatttacct
cgcgttcgctgccgacacgaatatgtaactgttacaccagagggattcaggttccgggga
caaatgttcgacaatgtcaactccttgttccgttggttcaaggaacatttccgagaccct
gtccctggtcaaggaactccaagcacacctcgaggtgcgatgacatctagaaccccatac
cataatactccgggtgtgaatatgtcaagtatgaatcaggaggcaatacagagagtagcc
caaaatctaccgcatcacatgcttcactctctgtcacaagttgcaaatcaaactccacat
cattatccaccgcatactcctggcgcagcaagcgcaggaccgtacggaggcatgcatacc
tatcccaatactccttacaccccatcgggacaaacaccattcatgaccccgtatcagact
ccccatcatacacctcaccacggtcagccaacgcctaggtacggccagcaaacgccaaat
catcaccaaggccagtttgttcatcctgggccaaccacagtgacatctgctcaccataga
acaacaccttcacatcgtccaacaccgcaaatgcccacactagccggagacccgatggat
tggaaaaaagctgccgaggcatgggctaaactgaaacagatcactcccaggatctctggg
aacagcactcctagatatgaggactcgagaaaaactccgcggggatacgacgatggatca
ggtcgagctacaccccgcaacaggccaccaacggcacgtacaccgtcgtataaatcaccg
agaggaaccccacatacgaattcgagtcccaggagtatgtctcttagcggagacggtact
ccgttgtacgatgaaaattaa
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integrated database retrieval system
