Neodiprion pinetum (white pine sawfly): 124217108
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Entry
124217108 CDS
T08966
Symbol
RpII140
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03020
RNA polymerase
npt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124217108 (RpII140)
09124 Replication and repair
03420 Nucleotide excision repair
124217108 (RpII140)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124217108 (RpII140)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124217108 (RpII140)
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124217108 (RpII140)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124217108 (RpII140)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124217108 (RpII140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124217108
NCBI-ProteinID:
XP_046478355
LinkDB
All DBs
Position
4:complement(17781001..17786264)
Genome browser
AA seq
1175 aa
AA seq
DB search
MYAVEDDQYDDEDVEEISTELWQEACWIVINTYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPQIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMM
AKSGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETK
KAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENQTLLLKKRHIDMLKEREYTNYGWQVLVASG
VVEYIDTLEEETVMIAISPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYG
YQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNICGLIAIANLRNNTFECKG
CKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMVI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcagtggaagatgatcagtacgacgacgaagacgtggaggaaatctcaacagaa
ctgtggcaagaggcctgctggatagtgataaacacatactttgacgaaaagggactggtg
cgtcagcagctggacagttttgacgagtttatacaaatgtctgtacaaagaatagttgag
gattcacctcagatcgacctgcaggctgaggctcagcacacatctggagaaatcgagaat
cctgttagacacctgctcaaatttgaacaaatctatctctccaaaccgacacattgggaa
aaagatggagccccgtcacccatgatgcccaatgaagctagactaagaaatctcacctat
tctgcacccctttacgtcgatattaccaaaactgttgtcaaagatggagaggacccaata
gaaacgcaacatcagaagactttcattggaaagattcctatcatgttgagatcgacttac
tgtctgctttctggtctgacagatcgtgatttaactgaattaaacgaatgccctttagat
cctggcggttattttatcataaatggttctgagaaggtcctcattgcgcaagaaaaaatg
gccacaaatactgtgtatgtgtttagtatgaaggatggaaagtatgcctacaaagcagag
attcgatcctgtctggagcacagctctcggccgacgtcaactctgtgggtaaacatgatg
gcgaaaagtggcgcaagtattaaaaaatcggctattggacagagaataatagctatactt
ccgtacataaaacaagaaataccaataatgatagtgttcagagctttggggtttgtggcg
gaccgtgacatcctcgagcacattatatatgactttgacgatccagaaatgatggagatg
gtgaaaccgtcgctggatgaagcgttcgttatacaagaacagaacgtggctctgaatttc
attggtacaaggggtgcgagacctggagtgacaaaggagaagcgtataaagtacgcaagg
gagatattgcaaaaagaaatgctgccccacgtgggcataagtgatttctgtgaaacaaag
aaagcctatttcttgggatacatggtacacaggctgctctcagcctcgttgggcagaagg
gaactcgacgatcgagatcactacggaaacaaaagactggatctagctggaccgctgtta
gcgtttttgtttagagggttgttcaagaatctcatgaaggaggtgagaatgtacgcccaa
aagtttattgatagaggaaaagactttaacctggagctggccatcaagactaagataatt
acagatggtttgagatactcgctggcgacgggaaactggggagatcagaaaaaggctcac
caagcaagagccggtgtttcccaggtgttgaacaggcttacttttgcctcaactttgtcc
catttgaggagagtgaattcgcccattggcagagatgggaaactggctaaaccacgtcag
ctgcacaatactttatggggaatgttgtgccctgctgagacaccggaaggtgcagctgta
ggtttggtcaagaatctggctctgatggcgtacatcagcgttggatcacagccatcgccg
attctcgaattcttagaagaatggtcaatggaaaatcttgaggaaattgctcccagtgcg
attgctgatgcgacaaaaattttcgtcaatggttgctgggttggaatacacagagatcca
gaacagctcatggccacgttgagaaaactcagaagacagatggacattatcgtttctgaa
gtatctatgatcagagacatcagggaccgagagattaggatttacacagatgctgggcga
atttgcaggccgcttttaatcgtcgagaaccaaacgttactgctcaaaaaacgccacatt
gacatgctcaaggaaagagaatataccaactacgggtggcaggtgttggtcgctagtgga
gttgttgagtacatcgatacgctagaagaggagaccgtgatgatcgcaatatcgccagag
gatctccgacaagagaaggagtacgcgtactgcacaacttacacccactgtgaaattcac
cctgctatgattctcggggtgtgcgcttccatcattccattccccgatcacaatcagagt
cccaggaacacctatcaaagcgctatgggtaaacaagcaatgggtgtttatattacgaat
ttccacgtccgaatggataccttggcgcacgttttatactatccccacaaacctttggta
acaacaagatcgatggaatatttacggttcagagaactacctgctgggataaacagtatt
gtggctattctctgctacacgggatataatcaggaggatagtgttatcctgaacgctagc
gcggtggaaagaggattcttcaggtccgttttctaccgttcttacaaagactccgagtcc
aagagaatcggggaccaagaagaacagtttgagaaaccgacaagacaaacgtgtcaagga
atgagaaacgcgatttacgacaaattggacgacgatggtattattgcgccgggaattcga
gtgtctggcgacgacgtcgtcattggcaagactattacactccccgaaacagacgacgag
ctcgacagtacgacaaaacgatttacaaaaagagacgcgtcaacctttttgcgaaacagt
gaaactggaattgttgatcaagtcatgctgacgttgaacagcgagggctacaagttctgt
aaaattcgagtgcgcagcgttcggatcccacagatcggtgacaaattcgcttctcgtcat
gggcagaaaggtacttgtggtattcagtacaggcaggaggacatgccgttttcgtgcgag
gggttaacaccagacatcatcattaatcctcacgccattccgtcgcgtatgacaatcggt
cacttgatcgagtgcatccagggaaaagtatctgcaaataaaggtgagatcggcgatgca
acgcccttcaacgatgccgtgaacgtacaaaaaatctccacgcttcttcaagaatacgga
tatcagctcagaggtaatgaagttatgtacaacggacacacaggtcgtaaaataaatgcc
caagtcttccttggtccgacttattatcagcgtttgaagcatatggtggacgataagatt
cacagcagagccagagggcccgtacaaattttggtcagacagcctatggagggtagggcg
agggatggtggactacgattcggggagatggaacgtgactgtcaaatatctcacggagcg
gcgcaattccttcgagagcgtctcttcgaagtgtcggacccgtacagaattcatatctgt
aatatctgcggcctaatcgccattgcgaatcttaggaacaacacgttcgagtgcaaaggg
tgcaagaacaagactcaaatttcacaaatccgactgccctatgcagcaaaactactattc
caggaattaatggctatgaatatagccccgcgacttatggtcatttga
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