KEGG   Neodiprion pinetum (white pine sawfly): 124217139
Entry
124217139         CDS       T08966                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
npt  Neodiprion pinetum (white pine sawfly)
Pathway
npt03030  DNA replication
npt03410  Base excision repair
npt03420  Nucleotide excision repair
npt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:npt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124217139
   03410 Base excision repair
    124217139
   03420 Nucleotide excision repair
    124217139
   03430 Mismatch repair
    124217139
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:npt03032]
    124217139
   03036 Chromosome and associated proteins [BR:npt03036]
    124217139
   03400 DNA repair and recombination proteins [BR:npt03400]
    124217139
DNA replication proteins [BR:npt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    124217139
  DNA Replication Termination Factors
   ELG1-RFC complex
    124217139
Chromosome and associated proteins [BR:npt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    124217139
DNA repair and recombination proteins [BR:npt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     124217139
  Check point factors
   HRAD17(Rad24)-RFC complex
    124217139
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_24 AAA_16 AAA_22 Mg_chelatase bpMoxR AAA_30 AAA_14 Rad17 AAA_11 AAA_19 Gp44_lid AAA_assoc_2 AAA_5 DUF815 AAA_7 SLFN-g3_helicase ResIII RuvB_N DUF6571 DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 124217139
NCBI-ProteinID: XP_046478413
LinkDB
Position
4:complement(27313483..27317773)
AA seq 357 aa
MHGFLKRGKLGPGDRKPTSSSSSKDKRKGPSPPWVEKYRPKTVEDVVEQGEVVKVLQQCL
VGGDFPNLLFYGPPGTGKTSTILAAARQLFGDMYKDRILELNASDERGIQVIRDKVKTFA
QLTASGTRPDGKPCPPYKIIILDEADSMTNAAQAALRRTMERESRSTRFCLICNYVSRII
EPLTSRCTKFRFKPLGQEKIIERLELICNMENLKADKAVLMKVVDASGGDMRRAITCLQS
VSRLKGKGAEFAIDDVLEVTGVIPDKWLDEMIEMCQSKDYNKVEMFIDNYMMEAYAVSQV
IEQLNDKIVYSTELSDKQKAIIGEKLAECSYRLLEGGSEYMQLIDLCCGIMKAYEVD
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcatggttttttgaaaagaggtaaactcggccccggtgacagaaagcctacttcaagt
tcgagttcgaaggataagcgtaaaggaccttcaccaccatgggttgaaaaatatagaccc
aaaactgtagaggatgttgttgaacaaggcgaagtagtcaaggtcttacaacaatgtcta
gttggtggcgatttccccaatctgttgttttatggcccaccagggacgggaaagaccagc
acaatattagctgctgcaagacaattatttggggacatgtacaaagataggatattagaa
ttaaatgcctctgatgaacgtggcatccaagtaatcagagacaaagttaaaactttcgca
cagttgacagccagtggcacaagacccgatggtaaaccatgccctccatataagataata
attcttgatgaagcagatagcatgactaatgctgcacaagcagcgttacgacgcactatg
gaacgtgaatctcgcagcacacgattttgcctaatatgtaactacgtctctcggatcata
gagccgttaacatctcggtgcacgaaattcagatttaagccattgggtcaagagaaaatc
attgagcgcctagaactaatttgcaatatggaaaatttgaaagcagataaagctgtattg
atgaaggtagtcgatgcttctggtggagatatgagacgagctataacatgcttacaatct
gtatcaagactaaagggcaaaggtgctgaatttgcaatagatgatgtactggaagttacc
ggggtgattcccgataaatggttggatgaaatgattgaaatgtgccagtcaaaggattac
aacaaagtggaaatgttcatcgacaattacatgatggaagcttatgcagtatcacaggtt
attgaacaattgaatgacaaaattgtttattccaccgaactctctgacaaacagaaggcg
ataattggagaaaaacttgcggaatgcagttatcgattgttggaaggcggaagcgaatat
atgcagttaattgatctttgctgcggtatcatgaaagcctatgaagttgattaa

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