Neodiprion pinetum (white pine sawfly): 124217155
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Entry
124217155 CDS
T08966
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt04512
ECM-receptor interaction
npt04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124217155
04518 Integrin signaling
124217155
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npt00536
]
124217155
Glycosaminoglycan binding proteins [BR:
npt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124217155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
CFC
VWC2L_2nd
PhoD
Motif
Other DBs
NCBI-GeneID:
124217155
NCBI-ProteinID:
XP_046478464
LinkDB
All DBs
Position
1:complement(970685..988714)
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AA seq
1612 aa
AA seq
DB search
MTGRSGRTRLLLLGIAAFLVLLESTETQAARTKIRHHRIRPVQAQQPDNARNTDYDYEPE
YYDTYDDYEEQIKNETQPSVSPVPEENGAPPVRPTSASSGSTSFGENLVGPRLPGSAPTT
SSPDNPPTETVPESPEPPSGGGDNVGCTFDGVPHGADDEWKPDRCTSCRCIRGKAECSQS
IPCLSGGNCDGVVCVQISCETEQYIPLGQCCPVCAEPGPITGGAASLQPNLPSGILPGES
NRVNSIAVSGPRGEPGRPGDGGRQGDAGFPGTPGTPGIPGPPGPPGPAPDVSLYYQQLAL
SQAGQDKGPTGAAAPLYGGPDAYAYMQAQVGPVGPRGPPGPNGNPGPQGFQGIRGEPGEP
GPMGPTGLPGPRGLTGLPGKDGNVGEDGESGPQGSPGPMGPRGLPGMPGLPGMKGHRGFP
GLDGAKGEQGHSGEKGSSGGPGPMGPMGLMGPAGPRGERGREGSPGPPGIRGIDGISGPP
GVPGVPGKSGPPGFPGSPGNKGDQGAQGSKGSMGLQGPRGESGRPGQPGESGPSGPQGKD
GYPGEKGSTGAPGMLGQPGFPGVRGQPGLAGNPGTPGAKGMPGLPGERGYKGEIGAKGDS
GAPGPRGMPGPAGNEGKRGKRGMRGSIGASGPPGERGIPGVRGLPGPDGALGPKGQTGDR
GPVGGSGPKGATGDPGRPGLQGLQGPRGLMGRPGGPGKPGNPGERGIQGADGKPGDIGPM
GLQGLPGPLGLPGDKGYPGESGRDGEPGAQGPPGPRGDSGKDGPSGAPGPQGPPGSDGGR
GPPGPAGPRGFQGMPGSSGNPGMPGKDGEVGLQGPPGLPGPSGNRGERGFPGERGPVGSP
GAPGLRGESGSQGNDGFPGTPGPKGDKGHSGLPGLIGLPGLRGAPGMPGDKGERGSYGPV
GPEGPAGRMGERGPQGPMGQPGPPGEPAERGDTGPPGVPGEAGAPGNPGERGPQGPQGLQ
GFPGPHGLSGLPGVKGERGYQGLKGDQGSPGATGNPGEPGLPGLVGLTGAKGARGEAGTR
GEPGLMGPPGLPGLLGAAGQPGAPGAPGLAGLPGVKGSQGDTGRTGNPGPMGNPGMPGVE
GMKGESGSEGPPGLSGPPGPQGPAGDRGMPGLPGPAGAVGLRGMRGAPGETGLPGKPGPE
GPLGPNGMPGPAGPPGPGGEAGPEGSPGKQGQPGIAGRPGDKGPPGMPGSSGNPGPSGLP
GPPGQSGPQGPAGERGLRGEAGPQGVEGQRGATGKPGPVGPEGIKGDRGEPGPTGAKGHR
GLIGLQGLQGSPGFPGEKGMVGAPGLDGKNGEIGVRGLPGRDGSQGPQGMPGNTGPRGPP
GEEGRHGATGPPGPPGPPGPPGELGLGYDAASLAALLNAGQGQSKGPDPLSGDEPARIFG
KDITEAERKELIMKAYEQLKASFQKYVKPDGQKQSPAKTCRDLFVAYPEKPSGEYWIDPN
EGDQRDAILVYCDIENRKTCLLPKPPQSPEITYIGNEQEVWLSEMENGMQITYKADTNQI
SFMQLLSSHAEQNVTYHCKNTVGYFDSQRRTYRRGLKLLAWNDVELTPRGNQRLRYDMIL
DECRERSHQWGKTMISYQTDKPVRLPILDVGLRDVGKQDQRFSVEIGPVCFR
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggagaagcggccgaacccggctccttcttctggggattgccgccttcctggtc
ctcctggaaagcaccgaaacccaggcggcgagaaccaagatcaggcatcaccgtataaga
ccggttcaggctcaacagccggacaatgcacgtaacaccgattatgactatgaacctgag
tactacgacacctacgacgactacgaggagcaaatcaagaacgaaacgcagccgtccgta
agtcccgtaccagaagaaaacggtgccccgccagtaagaccaacgtctgcatcgtctgga
tcaacatcatttggtgaaaacttggtcggtccgagactgcccggaagtgcgccgacaaca
tcatcccctgataatccgccgactgagacagttccggaatcgccggaaccaccaagcgga
ggtggtgacaacgttggctgcacattcgatggggtgccccatggagccgacgatgaatgg
aagccagaccgttgcacatcgtgccgctgtattcggggaaaagctgaatgttcccaatcg
attccatgcctatcaggtggaaattgcgacggtgtggtctgtgtccagatatcctgtgag
acagaacaatacattcctctgggccagtgctgtcccgtatgcgcagagcctggaccaata
acaggaggagccgcttccctacaaccaaatttaccgtcaggaattcttccgggagagagc
aatcgggtcaattcaattgcagtctccggtccaaggggagagccgggacgcccgggagac
ggcggtcgtcaaggagacgcgggatttccgggaacccccggcactccaggcattcctgga
ccacccggacctccgggacccgcacctgacgtgtccctgtactatcaacaactcgccttg
tcgcaagctggacaagacaaaggtcctacaggagctgccgcacctttgtacggaggtcct
gacgcatatgcttatatgcaagctcaggttggtcccgttggaccccgcgggcctccagga
ccgaacggcaatcccggtcctcagggcttccaaggaatacgaggcgagcccggagaaccc
ggacccatgggaccaaccggcctgccgggacctcgaggattaaccggacttcccggaaag
gatggtaacgttggcgaggacggagagtcagggcctcagggttctccgggccctatgggc
ccaagaggtctaccgggaatgcctggccttcctggtatgaagggacaccgtggatttcct
ggtctggacggagcgaaaggagagcaaggtcattcgggagagaaaggatcttccggtggg
ccgggaccgatgggtcccatggggttaatgggtccagctggtccgcgcggcgagcgaggg
cgcgaaggatctccgggacccccgggaatccgaggaatcgatggcatttcagggccaccc
ggagtgcccggtgtaccaggaaaatcaggacctcccggttttccgggcagccccggtaat
aaaggggatcaaggtgctcaaggttctaagggcagtatgggtctccaaggaccaagaggc
gaatctggacgccccggccaacctggagaatctggaccatccgggccgcaaggaaaagat
ggttacccgggagaaaaagggagtaccggagcacccgggatgctgggacaacccggtttt
cctggagttcgggggcagccggggctagctgggaatccgggaactccgggagcgaagggg
atgccgggcttgccaggcgaaagaggatacaagggtgaaatcggggcgaagggtgactcc
ggagctcccggtcctcgcggtatgcccggaccagccggcaacgagggtaaaagaggaaag
cgaggaatgcgaggttccatcggggcctccgggcctccgggtgaacgcggaatacccggt
gttcgtgggcttcccggtcccgacggcgccttagggcccaaaggacaaaccggagatcgt
ggacccgttggaggaagtggtccaaagggtgcgaccggagatccagggaggccaggtctg
caaggcttgcagggtcctcgagggttaatgggacgtcctggtggaccaggaaaacctggg
aatccgggagagcgaggaattcagggtgcggacggaaagcccggtgatataggaccaatg
ggactacagggattaccgggacccctgggacttcctggagacaaaggatacccgggagaa
tctggaagagacggtgagccaggtgcacaaggtccaccggggccgagaggtgactctggt
aaggacggaccatcgggtgcaccaggtcctcaaggaccgcccggaagcgatggaggccga
gggccaccaggtcccgcaggtcccagaggattccagggaatgcctggaagcagcggtaac
ccgggaatgccagggaaggacggagaagtaggacttcagggtccacccggacttccggga
ccttctggaaatcgaggagaacgtggttttcccggggaacgtggtccagtcgggtcaccc
ggggcaccgggactaaggggagaatcaggatctcagggcaatgacggatttccgggtacc
ccaggacccaagggtgataaaggacactcaggactgcccgggctaataggattgccggga
cttcggggcgcgccaggaatgcctggcgataaaggagaaagaggatcgtacgggcccgtg
ggtcctgaaggaccagcaggaagaatgggcgagcgtgggccgcaaggaccaatgggacag
ccggggccacccggcgaaccagctgagcgtggagacaccggacctccgggagtccctggt
gaagccggagctcctggtaaccccggagagagaggacctcaaggtccccaaggccttcag
ggcttccccggaccgcatggtctttccggattgcccggtgtgaagggggagcgtgggtat
caaggattgaagggagaccaagggagccctggagcgacaggaaatcctggggaaccggga
ctcccgggtctggtcggattgaccggagccaaaggagctcggggcgaagccggtaccagg
ggtgaacctggattgatgggtcctccgggcttgccaggactactaggagctgcgggtcaa
ccaggcgctccgggagctccaggtctcgcggggctaccgggggtcaagggaagccagggt
gacaccggtcgaaccggcaatcccggaccgatgggtaaccctggaatgccaggagtggag
ggtatgaaaggggaaagtggatcggaggggccgccaggcctgagtggtccaccggggccg
caaggaccggcaggagaccgaggaatgcccggactaccggggcccgcgggagccgtcggc
ctcagagggatgcgaggtgctccaggtgaaactggattacccggaaaaccaggacccgag
ggaccgctaggacctaacggaatgcctggccctgccggacctccaggtcctggtggtgag
gccggtccagaagggtctccgggaaaacaagggcaaccgggaattgctggaaggcctggt
gacaagggaccgcctggtatgcctggatcgtccggaaatcctggaccaagtggattgcct
ggaccgccaggacaatctggaccacaaggaccggcgggagaaagaggcctgagaggagaa
gctggccctcagggtgtcgaaggacaacggggtgcgacgggtaagccggggcctgttggt
cccgagggaataaagggtgatcgcggagagcccgggccaaccggtgcgaagggacaccgg
gggctgatcgggcttcaaggactgcagggatcaccgggtttccctggtgaaaagggaatg
gtcggagctcctggcctggatggaaagaacggagagattggcgtgcggggtctcccaggt
agagacggaagccaagggcctcaaggtatgcctggaaacacggggcccaggggtccgccc
ggagaagaaggacgacacggagcaactggaccaccgggaccaccaggtcccccgggaccc
ccgggagaacttggccttggctacgacgcggcatctttggctgctcttctgaacgctggt
cagggccagagtaagggtcccgacccactgagcggtgatgaaccagcaaggatattcggc
aaggatatcaccgaggcagagcgcaaggaacttataatgaaagcgtacgagcagctcaaa
gcgtccttccagaagtacgtcaaaccggatgggcagaaacaatcgccagcaaaaacctgt
agggatcttttcgtcgcatacccggaaaaaccgagtggcgaatattggatagacccgaac
gaaggagaccagcgtgatgcaatcctggtttattgcgatattgaaaatcggaagacctgc
ctgttgccgaaaccgcctcaatccccggaaatcacatatatcggtaacgaacaggaagtt
tggctgagtgagatggaaaacggaatgcagattacttataaggccgataccaaccagata
agttttatgcaactactgtccagccatgctgaacaaaacgttacttaccactgcaaaaat
accgtcggctactttgattcccaacgacgaacatacaggcggggattgaagcttcttgcg
tggaacgacgtcgagcttacaccccgtggtaatcagcggctgcggtacgacatgatattg
gacgagtgtcgggaacgttctcaccaatggggcaagacgatgatcagttatcaaacggac
aaaccggttcgtctgccgatattagacgttggcttgagggacgttggtaagcaggatcag
agattttcagtggaaattggtcccgtgtgcttcagataa
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integrated database retrieval system
