Neodiprion pinetum (white pine sawfly): 124218193
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Entry
124218193 CDS
T08966
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03008
Ribosome biogenesis in eukaryotes
npt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124218193 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
124218193 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124218193 (pcm)
03009 Ribosome biogenesis [BR:
npt03009
]
124218193 (pcm)
03016 Transfer RNA biogenesis [BR:
npt03016
]
124218193 (pcm)
03036 Chromosome and associated proteins [BR:
npt03036
]
124218193 (pcm)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124218193 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
124218193 (pcm)
Ribosome biogenesis [BR:
npt03009
]
Eukaryotic type
Pre-60S particles
RNases
124218193 (pcm)
Transfer RNA biogenesis [BR:
npt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124218193 (pcm)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124218193 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
dsrm
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
124218193
NCBI-ProteinID:
XP_046480623
LinkDB
All DBs
Position
4:43592032..43609941
Genome browser
AA seq
1681 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSEVVREYQIPEYDNLYLDMNGIIHICSHPNDLDPHFRISEEKI
FRDIFHYIEILFHMIQPQKLFFMAVDGVAPRAKMNQQRGRRFRSAKEAEVLEAKAKERGE
VLPKEARFDSNCITPGTVFMTRLNEQLKYFVTYKITTDKLWQKCKVILSGHETPGEGEHK
IMDYIRYIKSQSNYDSNTRHCLYGLDADLIMLGLCTHEPHFSLLREEIKFGNKQKRVSTP
EETTFFLLHLSVMREYIEHEFSSLKDKLSFDYDIEKIIDDWVLMGFLVGNDFIPNLPNLH
IANGALPILYLAYMEVLPTLDGYINEGGTLKLDRFEKLMERLSRVDIEQFAEHYADLKYF
ESKTGRRPNETERHTYHNSEDASEASAKNPGNKDLEDLIKSTYNMFSGHSDEEEPLDMDD
DSDNDVYNMEFIQHKRDYYMNKLEYENVDADVLKSQAECYVRAIQWNLNYYYNGCCSWSW
YYPHHYAPYISDIKGFKDLKLEFDMGRPFLPFQQLLAVLPAASRSLLPKPFESLMIGEQS
PIIDYYPAEFKTDLNGKRQEWEAVVLIPFIEETSLLEAMEPCYAKLTPDEKQRNSHGPMY
VYYHTTEDLGLYEAPQYFPKLSTNHAKLKLIKWEDIIVPREKLVKGLCPGIRLDVYFPGF
PTLKHINHTAELRKAKVKVFEQVSRGENMILQIVPSDARNLADLAGQILGTSIFVSWPHL
VEARVVAVSNREVKYTLSADRNETIVKEEMRGPLSVQWNQTKRAISENYMNRLGIDVGET
DVLVHACLMTGRRYIFGTQGKLSLEKQWSDVPSAFALQATVGDIAVHDSSFVQYKNIGEV
FTPKSICFMLGHPHYGAMGEVSEGGTSTKTGRVKLAMWITEEPNLDLLKQSQSDAKSRYM
HGSIAAQRLGINSHLLSRITGSIYVMQGPREQLENPKRNLGLNLKFNKKNQEVPGYTKKV
NGQWLYSAKAIDLIRAYMRKFPLLFEKLASNVTNDIYYEDELFTEPECMTVSAVSSWLKE
QPFYNIESCSCGTESLDFEDIEEIERVVDAFIESQKNSPTGKTVMMQVKPHLLFKPSLHM
GNFPPDATAQHKIYDRVVSVRENFTVPLGYRGTIFAIPRTEKISDLMYDIVFDKEFVGGL
SLNMCSANRGYRLAPSDFINLSHGFRAENVKSGKSNVDTSEPLSWRSPSNSRNHTSRSNT
SAFALFNSQGGLAPAFVKGEMQFPVSPMKIMKKNSDQTQLNHKITAETNVQDNVNAQSKA
RGAVSQEQSNSKVENETAQIVQDGKGQSLQRSSEFQALWNELHRLQKSSGSNSQQKLPMT
PNTESKETPSTVTNSPREAHLWPQDPSAFLKAMLKISDDNSKNNTASSNKPPAFPQLSKS
SDAPPLVQQLFDHARQVENTKKSNTVSYCSQLLTYFQLKGMGMPRYSYSPNKETNFVCAR
IFLPNGRTFGGEFCQSRELAAESAAKRAYTELDLNNIPDPGVNILPTPPQQWYNTRHRAI
HPQNIRPIINCPPPMPPMMVPNPFMSVFNGSSNVPQSPNNSSLLPTFSQTRPQQRPHPGT
GNSSKNWRTENNKSEQRKTAAFVPLQAQKQHRSANPRNITGTANLIDNLHRKQQERKETE
TNEETTSKVTGSKTTDTPRPQNIQNGLQNSLKHQQKSAKQRRSRIAANFGSVSVPNGAGS
K
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccaaaattcttcaggtatatgagcgaaagatatccatgcctcagcgaggtt
gtcagggaatatcagatacctgaatatgacaacttatacttggatatgaatggcattatt
cacatatgttctcatccgaatgacttggatccccactttcgtatatcggaagaaaaaata
tttcgggacatatttcattatattgaaatattgtttcacatgattcaaccacaaaagcta
ttttttatggcggtcgacggtgtagcaccacgtgctaagatgaatcaacaaaggggccgc
agatttcgctcggctaaagaagctgaggttttagaagccaaagcgaaggaaaggggcgaa
gtacttccgaaggaggcacgatttgactccaactgtataacaccaggaactgtattcatg
acacgtcttaatgagcaactcaaatattttgtcacctacaaaataacaacggacaaactt
tggcagaagtgcaaagtgatactgagcggacatgagacaccaggtgaaggagagcacaaa
atcatggattacattagatatattaaatctcaatcgaattatgacagtaacacaaggcac
tgcttgtacggtttggatgctgatctcataatgctgggtctgtgcacgcacgaacctcat
ttctccttgctgagggaagaaataaagtttggaaataaacagaagcgagtgtccacccct
gaggaaaccacattttttcttcttcatttgtcagtaatgcgagaatatatcgaacacgag
ttctcttcacttaaggataaactttcatttgactatgacattgagaaaattatcgatgac
tgggtactaatgggtttcctggttggaaacgattttattccaaatttgccaaatttacat
atcgctaacggtgccctgccaattttatacttggcttacatggaagtgctgcctacactg
gacgggtacataaacgagggcggtactttgaagttggatcgctttgaaaaattaatggaa
cgtctaagtcgggtggatattgaacaatttgcagagcattatgctgatttaaaatatttc
gaatccaagaccggtcgaaggccaaatgaaacggaaaggcacacttatcacaattctgaa
gatgcgtcagaagcctcagcaaaaaatccgggaaataaagatttggaagatttaattaaa
tctacctacaatatgttttcgggccattctgatgaagaagaaccattagacatggatgac
gattcggataacgacgtttataacatggaatttatccaacacaagcgtgactattatatg
aacaagttggaatatgaaaatgtcgatgcagatgtattgaaatcgcaagcggaatgttac
gtcagagcgattcagtggaatctgaattattattacaacgggtgttgcagttggtcgtgg
tattatccgcatcactacgcgccatatatttccgatataaagggttttaaagacttgaaa
ttggaatttgacatgggccgaccatttttaccttttcaacagctattggcagtattgcca
gcggccagtagatcattactgccaaaaccctttgaatcgttaatgattggcgaacagtca
ccgatcatagattactatccagctgaattcaaaactgacttgaatgggaaacggcaagag
tgggaggctgtcgtccttattccattcatcgaagaaacaagtttattggaagcaatggag
ccgtgttacgctaagctaacacctgatgagaaacaacgaaattcccatgggccgatgtac
gtttattaccataccacagaagatttgggtttatacgaagctcctcagtattttcctaaa
ttatctacaaatcacgcaaagcttaaactaatcaagtgggaagacattattgtaccaaga
gaaaaactagtaaaaggattatgtccaggcataagactggatgtttacttcccaggattt
ccaacgttgaagcacattaatcacacagctgaattacgcaaagccaaggtgaaagttttc
gaacaagtgtcacgaggtgaaaatatgatactacaaatcgtgccatccgatgcacgaaac
ttggctgacctggccggccaaatactagggacgagtatttttgtttcttggccgcatttg
gtcgaggcacgtgttgtggctgtatccaatcgtgaggtgaaatacactttgtcagctgat
cgaaatgaaactatagtaaaagaagagatgagagggcctctatccgtccaatggaaccag
acaaagagggcgattagcgaaaattacatgaaccggttaggaattgatgtaggagagacg
gatgttttagtgcatgcgtgcttgatgacgggtagacgttatatttttggcactcaagga
aaattgtccttggaaaaacaatggagcgacgtaccgtcagctttcgcacttcaggcaacc
gtcggtgatatagccgtacacgattctagctttgtacagtacaaaaacattggggaagta
tttacaccaaagagcatatgttttatgctgggacacccgcattacggagctatgggcgag
gtctcggaaggtggtactagtacgaaaactggcagagtcaagttagccatgtggatcacc
gaggagccaaacttggatttgttaaaacaatcacaatcagacgcaaaatcgcgctacatg
cacggcagtatagcggctcaaagactgggaattaatagccacttgctgagccgcatcacc
ggttctatctacgtcatgcaagggccaagagagcaattagaaaatccgaagcgtaacttg
ggactcaacttgaaatttaacaaaaaaaaccaagaggtgccaggttatacgaaaaaagtt
aacggccagtggttatatagtgcaaaggctatcgacttgatacgtgcttacatgcgaaaa
tttcctttgttatttgaaaaactggcaagtaacgtgacaaatgacatctactacgaggat
gagttgtttacagaaccggagtgtatgacggtgagtgctgtatcatcttggttgaaggaa
caaccgttttacaacatcgaaagctgcagctgcgggactgagagtctggattttgaagat
attgaggaaatagaaagagtggtggatgcatttattgaatcccaaaaaaattccccaacc
gggaagaccgtaatgatgcaagtcaagccacatttattgttcaagcctagtcttcacatg
ggtaacttccctcccgatgcaactgcgcaacacaaaatttatgacagggttgtcagtgtc
agagaaaatttcaccgtgcctcttggatatagaggtacaatttttgcaataccgagaaca
gaaaagatttctgatttaatgtacgacattgtattcgacaaggaattcgtaggaggttta
tcattgaatatgtgctcagccaatcgcggttataggctagctccttcagatttcataaac
ttgtcccatggttttcgagctgagaatgtcaagtcaggcaaatcgaatgtggacacatcc
gaaccgttatcgtggaggtcgccttcgaattcccgaaatcatacctctcgttcgaatacg
agtgcctttgccttgttcaacagccagggtggccttgccccagcctttgtcaagggtgaa
atgcagtttcctgtatcaccgatgaaaataatgaaaaaaaacagtgatcaaacacaactc
aaccacaaaattaccgccgagacaaatgtccaggacaatgtcaacgcacagagcaaagca
cggggagcggtatcgcaggagcaatcaaattctaaggttgaaaatgaaacagcacagatt
gtacaggatggtaagggtcaatctttacaaagatcatcagagtttcaagctctgtggaac
gagttacatcggttacagaagtccagtggttcaaacagtcagcagaaattaccaatgaca
ccaaataccgaatcgaaggaaacgccgagtactgtgaccaattcgccaagggaagctcac
ctttggcctcaagatcccagtgcttttttgaaagcgatgttaaaaatctcagatgataat
tcgaaaaacaatactgcatcatccaacaaacctcctgcattcccacaattatctaaatct
tcagatgcaccacctctggtacaacagttattcgatcatgccagacaagtggaaaatact
aaaaaatcgaatacagtatcctattgttcgcaactgttgacatactttcaactaaaaggt
atgggcatgcctcgttacagttattcaccgaacaaagagactaacttcgtatgcgcacgt
atcttcttacccaatggaagaacgttcggtggtgagttctgtcagagcagggaactcgcc
gctgaaagtgctgctaagagagcgtatacggaattggatttgaacaatataccagaccca
ggtgtcaatatattacctacgcctcctcagcagtggtacaacactcgtcacagggcaata
catccacaaaatattcgaccaatcataaactgtccacctccaatgccaccaatgatggtg
ccgaatccgtttatgagcgtattcaatggtagttcaaatgtaccgcaaagtccaaataat
tcgagtttgttgccaacattttctcagaccagacctcagcaaagacctcatcctggtact
ggaaatagttccaagaattggagaaccgaaaataacaagtctgagcagagaaaaactgcc
gcttttgtaccgctacaagcacagaaacagcatcgcagtgcaaacccaagaaatataacc
ggtactgcaaacttgattgacaacttgcaccgcaagcaacaagagaggaaagaaactgaa
actaatgaagaaaccacatcaaaggtaaccggatcaaaaacaacagacactccaaggcca
caaaatatacaaaatgggctccagaattcactgaaacatcaacaaaaatcggcaaagcag
aggagatcgcgaattgctgccaattttggctctgtttcagttcctaatggagccggatca
aaataa
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