Neodiprion pinetum (white pine sawfly): 124218214
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Entry
124218214 CDS
T08966
Symbol
tex
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124218214 (tex)
09122 Translation
03013 Nucleocytoplasmic transport
124218214 (tex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124218214 (tex)
03041 Spliceosome [BR:
npt03041
]
124218214 (tex)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124218214 (tex)
Spliceosome [BR:
npt03041
]
Complex C
Other components
EJC/TREX
124218214 (tex)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124218214 (tex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WDR55
EIF3I
ANAPC4_WD40
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Tricorn_2nd
eIF2A
Beta-prop_HPS5
RMC1_N
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_ELP1_1st
PD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Peptidase_S9_N
PROPPIN
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
124218214
NCBI-ProteinID:
XP_046480721
LinkDB
All DBs
Position
1:14119938..14124885
Genome browser
AA seq
411 aa
AA seq
DB search
MSVRARYVESIEQKPPTLPGPLGHTCPPKAIRKLIHKNLLRDPRGNCLYNLQSKFTGFPK
NFKELFWRHSKNCSPDRLAMLCGQLCQINMAASNSRVDELTSYFKTHNKIKEQQSHSAKV
HSVGWSCDGRLLASGSFDKCVCIFSLGTDRLKQETTFRGHGGSVDQLCWHSFHPELLSTA
SGDKTMRIWDTRSQKCTANIATRGENINISWSPDGNTIAVGNKEDLVTFIDARVMKIRAE
EQFNFEVNEISWNKDSDTFYLTNGQGCVHILSYPDLELLHVIKAHPGTCICIEFDPTGRY
FATGSADALVSLWDADELCCLRTFSRLEWPVRTISFSHDGQLLAAASEDLVIDIGEVETG
EKVADIPVEAATFTVAWHPKQYLLAYACDDKDTYDRKRDAGSLKVFGFSSE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtacgagcccgttacgtagagtcgatagagcagaaacctcctacgctcccaggc
ccacttgggcacacttgcccgccgaaagccatccgaaaactgatacacaaaaatttactt
agggaccccaggggtaactgtctttataatcttcagtcaaagtttactgggttcccgaag
aattttaaagaattgttttggcgccattcaaagaattgttcgcctgataggttggcaatg
ctgtgcggtcagctgtgtcaaataaacatggcagcgtcgaatagccgggtcgacgagttg
acaagttattttaaaacacataacaaaatcaaagagcaacaaagccactcagcaaaggta
cacagcgttggctggagctgtgacgggagactactggcgtccggctcgttcgacaagtgt
gtttgtattttttctcttggaaccgatcgtttgaaacaagagacaacgtttcgcggacat
ggaggaagcgtggatcaattatgttggcactcatttcaccctgagctactatcaactgca
agtggagataaaaccatgcgtatttgggacacaagatctcaaaaatgcacagcaaatatt
gcgacacggggtgaaaacatcaatatatcttggtcgcctgatggtaacacaatagcagtt
ggcaacaaggaggatttagtgacattcattgatgcaagagtaatgaaaattcgtgccgag
gaacaattcaactttgaagtcaatgaaatatcttggaacaaagattcggacacattttat
cttacaaatggtcagggatgtgttcatattctaagctatccggacctagaactactgcat
gtaatcaaagctcatccaggaacatgcatttgcattgaatttgaccctactggtcgttac
ttcgcaacagggtcagctgatgctttagtgtctctgtgggatgctgatgaattatgttgc
ctaaggacattttctcgattggaatggcctgttagaaccatttcattctctcatgatggg
caactcctagcagctgcttctgaagacttggtcatagacattggagaggtagaaacggga
gaaaaagttgccgatataccggtcgaagctgcaacatttacggtggcgtggcatccaaaa
caatatttattggcatatgcgtgtgacgataaagacacttacgatcgaaaaagggatgct
ggaagcttgaaagtttttgggttttcaagcgaataa
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