Neodiprion pinetum (white pine sawfly): 124218588
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Entry
124218588 CDS
T08966
Symbol
Lis-1
Name
(RefSeq) lissencephaly-1 homolog
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt00565
Ether lipid metabolism
npt01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
124218588 (Lis-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npt03036
]
124218588 (Lis-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npt04147
]
124218588 (Lis-1)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124218588 (Lis-1)
Exosome [BR:
npt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124218588 (Lis-1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_EML
NBCH_WD40
Beta-prop_Nup120_160
LisH_PAC1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
eIF2A
Beta-prop_SPT8
LisH
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR11_2nd
Nucleoporin_N
Beta-prop_NUP159_NUP214
Pox_A_type_inc
SutA-RBD
Motif
Other DBs
NCBI-GeneID:
124218588
NCBI-ProteinID:
XP_046481140
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Position
5:complement(3105790..3112854)
Genome browser
AA seq
410 aa
AA seq
DB search
MKMVLSQRQREELNKAIADYLSSNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIR
LQKKVMELESKLSEAEKEFIEGAPTRGKRSPTEWIPRPPEKFCLSGHRAPVNRVIFHPVF
SLMVSASEDATLKVWDFESGEFERTLKGHTDSVQDIAFDTTGKLLVSCSADMSIKLWDFQ
QSFACIKTMHGHDHNVSSVAFMPQGDFIVSASRDKTIKMWEVATGYCVKTLAGHREWVRM
ARVSPCGELIASCSNDQTVRVWHVATKETKVELRDHDHVVECIAWAPETSRGAINAAAGA
DNKGAHEGPFLASGSRDKTIRVWDVGAGVCLFTLQGHDNWVRGIVFHPGGKYIVSASDDK
TLRVWDTRNKRSMKTLEAHMHFCTSVDFHKSHPYVVSGSVDQTVKVWECR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggtcttgtctcaacgtcagcgggaggagttaaacaaggcgattgcagactat
ctgagtagcaatggatatcaagatgccctggaagcgttcaagaaggaagctgacatgcct
ggtgaggtggagcggaaatacggtgggttgctcgagaagaagtggacttcagtcataaga
ctacaaaaaaaggtcatggaactcgagtcgaaactatcagaggcagaaaaagaatttatt
gagggagcgcctactaggggtaagagatcaccgaccgaatggattccgaggccacctgaa
aagttctgtctctctgggcatagggcgcctgtaaacagagtaattttccacccagtattc
agccttatggtttctgccagtgaagacgccacgctaaaggtctgggatttcgaaagcgga
gaatttgagcgaacactcaaaggccacacggacagtgttcaagatattgcattcgatact
actggaaagctcttggtatcctgcagcgctgacatgtcaatcaagctgtgggactttcaa
cagtcatttgcctgcatcaagacgatgcacgggcatgaccataacgttagttcggtagca
ttcatgccgcaaggagactttattgtcagcgcgtcacgggacaagaccataaaaatgtgg
gaggttgctactggttattgtgtaaaaacgcttgcggggcacagggaatgggtccgtatg
gcacgggtgagtccttgcggtgaactgattgcaagctgctcaaacgaccagactgtcagg
gtatggcacgttgcaactaaagaaaccaaggtcgaactgagggaccacgatcatgttgtg
gaatgtatcgcgtgggccccggaaacatcgcgtggagcgatcaacgctgcagctggagca
gacaataaaggggcacacgagggacccttcctggcatctggatcccgagacaagacaata
cgcgtgtgggacgttggggctggggtatgtctattcactctccaagggcatgataactgg
gtacgtggaatagtgttccacccaggtggtaaatatatagtcagtgcatcagacgataag
acgctgcgggtatgggacacccgcaacaaacggtcaatgaagacgcttgaggcacacatg
cacttctgcacgtccgttgattttcacaagagccatccatacgtggtaagcggtagcgtg
gatcagacggtaaaggtttgggaatgccgctag
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