Neodiprion pinetum (white pine sawfly): 124218941
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Entry
124218941 CDS
T08966
Symbol
rdgB
Name
(RefSeq) protein retinal degeneration B isoform X1
KO
K24069
membrane-associated phosphatidylinositol transfer protein
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
npt04131
]
124218941 (rdgB)
Membrane trafficking [BR:
npt04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
124218941 (rdgB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IP_trans
LNS2_PITM1-3
PITM1-3
DDHD
Acid_phosphat_B
LNS2
Transthyretin
Motif
Other DBs
NCBI-GeneID:
124218941
NCBI-ProteinID:
XP_046481853
LinkDB
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Position
5:complement(876854..905059)
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AA seq
1270 aa
AA seq
DB search
MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESKGVGSGVEILVNEPYTNGPGGNGQYTR
KIYHVGSHLPAWFKSLLPKSVLTTEEEAWNAYPYTKTRYTCPFVEKFSIEIETYYYSDNG
YQENVFKLSGSDLRNRIVDVIDLVKDQLYGEYVKEEDPKLYVSEKTGRGPLTDSWLEEYW
ADVKGKSQPTPSGKSLMCAYKICRVEFRYWGMQTKLEKFIHDHALRKTMVRAHRQAWAWQ
DEWYGLTMEDIREIERQTQLALQRTMGAGESGEDAADDDQLDGTGNVSSSQDKDVAKTLA
ATLGSIEKNEDPQSPAYLRKQSDIPVINTAMSSEGELSPEDSPTESSAPRLIDERSDVKK
TWKRSNPSLHSPSSAKSFDIQVANWRMESIVRESESGSEDEFFDCQAGFIIPTIHKEDFG
DNSSLAKWSSLDLLAEEDDTVSPTAVTSNKQEDTIFSHSYLQRVASERSNKRLYIRSSAS
IDVSCPASPQHSPTNQPCRTTVLLIVLHAGSVLDANVDLTAKKSDITTFRGAFESVMRQH
YPSMVGHIAIKFVSCPSICTEVLCILSSLSPYSFDVSPSCTDAPQVTHDTIPIGSIPLLA
TCSPDYQDSVSRVVSGSNQVYQEFIKSEEGRGFNGQICFVADSVGSILGYDTLCRSLQYQ
SRHDSENSILENDNQVGEDNDGNEDGKHLSAPSPRRRSSSTSDNFNHCKLDFEVGEFFMF
GSPLSLVLAYRKISSTGDKNSNIPRPLVNQVYNLFHPTDPVAARLEPLISARFSLLPPVN
VARYQKYPLGNGQPYHLLEAVQTNPQLFVDGLNVPNTPMPHMRRMSEISLQSTMSGVVDN
IPLQAITALTQKWWGNKRIDYALYCPEGLANFPTNVLPHLFHASYWESSDVIAFILRQLG
RFDLPMLGNEEKELTCFRPGQPREKWNKKRTSVKLKNAAANHRANDVIVREGAPQVLIAR
FMYGFLDMIALTGEKVDIHVMKDAPAGEWTFLSTEVTDKTGRVAYKIPDEKALGYGIYPV
KMVVRGDHTSLDFFMAVIPPKTECVVFSIDGSFTASMSVTGRDPKVRAGAVDIVRHWQEL
GYLIIYITGRPDMQQQKVVSWLSQHNFPHGLVSFAEGLSTDPLRHKAAYLNTLIQEHGVI
IHMAYGSNKDISVYTAINLKPNQIFIVGKVSKKHQAFATILYEGYAAHLSALTAVGGSRP
AQGNARMVIPRGQFGLPGQNASLRRRRSAKRAVSHPLMGDVCVLERSTSVGPPPASQVPQ
LKRTMTQDKL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttgataaaagaatatcggatacctctgcctttgacagtggaggaatatcgcatagct
caactttacatgatagcgaaaaaatcacgcgaagaaagtaaaggcgtgggcagcggtgtt
gagattcttgtcaacgaaccttataccaacggtccaggtggcaacggacaatatactcga
aaaatataccatgtcggtagccatttgccagcttggttcaaaagtcttttaccaaaatcg
gttctcacgacggaggaagaagcttggaacgcttatccttacacaaagacacgctacact
tgtccgttcgttgagaaattctctatagagatagagacctactattattcggacaacgga
tatcaggagaatgttttcaaactctccggcagcgatttgagaaacagaatcgtggatgtc
atcgacttggtcaaggatcagttgtacggcgaatatgtgaaagaagaggacccaaagtta
tacgtgtcggaaaagacgggtcgcggaccgcttacagattcatggctggaagaatactgg
gcggatgtgaagggaaagtcgcagccaacaccttccggcaaatcgctgatgtgcgcctac
aaaatatgcagagtggaatttcgttattggggaatgcaaactaagttggaaaaattcatc
cacgatcacgcgcttcgaaaaacaatggttcgcgctcatcgtcaagcgtgggcttggcag
gacgaatggtacggtttaaccatggaggacataagagaaattgagaggcagacgcaactg
gcgctacagcgtacaatgggggctggcgagtcgggagaagatgcggcggacgacgatcag
ctggatggaacgggcaacgtatcctcgtctcaagacaaagatgtcgccaagactcttgcc
gctaccttgggaagcatagagaaaaacgaagacccccagagtccggcttacctcagaaag
caatcagacattccagttatcaatacggccatgagttcggaaggtgaattaagccccgag
gactcgccgacggaatcatctgctccccgactcatcgacgaaaggagcgacgtcaaaaag
acatggaagaggagtaacccgtcgcttcattcgccgagttcagctaaaagttttgacata
caagtagcgaattggcgcatggagagtatcgtcagagagtcggaatccggtagcgaggat
gaattctttgattgtcaagctgggttcataatacctactatccacaaagaggactttgga
gataattcgtcattagctaaatggagttctttggatcttctagctgaagaggatgacacg
gtttctccgactgccgtgacaagcaataagcaagaagacacaatattttcacattcgtac
ttgcaacgcgtggcaagcgaaaggagcaataagcggttgtacattaggtcttcggccagc
atcgacgtgtcctgcccagcttcgccccaacattctccaacgaatcagccatgcagaact
accgttctgctcattgtcttacatgccggaagtgttctagatgccaatgtcgacttgacg
gcgaaaaagtcggacatcactacctttagaggggcctttgaatccgtcatgaggcaacat
tatcccagtatggttggacacattgcgattaagtttgtttcctgtccctccatatgcaca
gaagttctctgtattttgtcgagcttgagcccttacagttttgacgtttctccgtcttgc
accgacgctccgcaggtgacgcacgacacaattcctatcggatctattccattgctcgca
acttgtagtccggattatcaggattcggtgtcaagagttgtgagtggctcgaatcaagta
tatcaagaatttatcaagagcgaagagggacgtggattcaacgggcaaatatgcttcgtc
gccgattcggttggttcgatattaggatacgacaccctctgccgatctttgcaatatcag
tctaggcacgacagtgagaatagcattttagaaaatgacaatcaagtaggcgaagataac
gacggaaacgaggatggtaaacatttgtcggctccctctccgagaagaaggtcttcctcg
acaagcgataatttcaaccactgcaaattagactttgaggtcggtgaattctttatgttt
ggaagtcccttgtctctcgtcctagcgtatagaaagatatcatctaccggagacaaaaat
agtaacattcctaggccactggtaaatcaggtttacaacttatttcatccgaccgaccca
gtcgccgctcgtttagaacctttgatttctgcaaggttttcacttctccctccagttaac
gttgctcgatatcagaagtacccgcttggaaacgggcaaccgtatcatctgctggaggct
gtgcagaccaatccgcaactgtttgtcgatggtttgaacgtgccaaacacccctatgcct
catatgcgaagaatgtccgagatatctctgcagagtacgatgtccggagtcgtggataac
atcccgttgcaagcgataacagccctgacgcagaagtggtgggggaataagagaatcgac
tatgctctgtactgtcccgaaggtttggccaactttcctacaaacgtgttaccccaccta
tttcacgccagttattgggaatcttcggacgtaatcgcttttatattaagacagttgggg
aggttcgatttaccgatgctaggcaacgaagaaaaagaactcacatgcttccgtccaggg
cagcccagagagaaatggaataaaaaacgaacgtccgttaaacttaagaatgctgctgcc
aatcatagagcaaatgatgttatagtgagagaaggtgctcctcaagtactaatagcgagg
tttatgtacggcttcttagatatgatagctttaacaggagaaaaagtagacatacatgta
atgaaagacgcgccggcgggcgagtggacttttttgtctaccgaagtaacggacaaaact
ggtcgagtcgcgtacaaaattcccgacgagaaagcactgggctatggaatatatcctgtg
aaaatggttgttcgcggtgatcatacttcattagactttttcatggctgtgataccacca
aagacggaatgcgttgtattcagtatcgacggctctttcactgctagcatgtccgtgacg
ggtagagatccgaaagtcagagcaggcgccgttgatatagtaagacattggcaagaactg
ggatacctgattatctatatcaccggacgacctgacatgcaacagcaaaaggtagtttcc
tggctttcgcagcataatttccctcacggcttggtatcctttgccgaaggtttgtcgacc
gatcctcttcgacacaaggctgcatatttaaacacgctgattcaggaacacggcgtgatc
attcacatggcttacggaagtaacaaggacataagcgtatacacggcaataaatttgaaa
ccgaatcaaatattcattgttggaaaagtttcaaagaaacatcaagcattcgctactata
ctctacgaaggctatgccgctcacttaagcgctctgaccgcggtcggaggctccagaccg
gcgcaaggcaatgctcgaatggtaataccgaggggtcagtttggtctaccgggacagaat
gcctcgttacgccgtcgaagatcagcaaaacgtgcagtgtcgcatccgttgatgggtgat
gtgtgcgtcttggaaagaagcacaagcgtcggaccaccgccagcttcgcaagtgccgcaa
ctgaaaagaacgatgacccaggacaagctctga
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