Neodiprion pinetum (white pine sawfly): 124219285
Help
Entry
124219285 CDS
T08966
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124219285 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124219285 (Mtr4)
03041 Spliceosome [BR:
npt03041
]
124219285 (Mtr4)
03009 Ribosome biogenesis [BR:
npt03009
]
124219285 (Mtr4)
03016 Transfer RNA biogenesis [BR:
npt03016
]
124219285 (Mtr4)
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124219285 (Mtr4)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124219285 (Mtr4)
Spliceosome [BR:
npt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124219285 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
124219285 (Mtr4)
Ribosome biogenesis [BR:
npt03009
]
Eukaryotic type
Pre-60S particles
Helicases
124219285 (Mtr4)
Transfer RNA biogenesis [BR:
npt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124219285 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
124219285
NCBI-ProteinID:
XP_046482590
LinkDB
All DBs
Position
1:complement(41260539..41268018)
Genome browser
AA seq
1081 aa
AA seq
DB search
MATICPKNLILPKVNRLNVAPENLAHQYGRRATTCTLHKKATNVKIKRNLVELQTTKYLY
FVMADFSEDLFQVFEESSEDVVQFSGDAIPFEESTATAKKEEQTDPSIKRDLEEIEEPFG
KRQRTDSITEDINLEELATRITIHTIETIESCTHEVAVPPAQDYIPLEKKSSLPAKEYKF
VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQK
YREFFEEFKDVGLITGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMR
DKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVVYTDYRPTPLQH
YIFPAGGDGIHLVVDESGEFKEENFNRAMNCLHQGGEASKGDQKGRRGGMRSNAGQTNIF
KIVKMIMERNFAPVISFSFSKKDCEIYAMQMAKLDFNTIDEKRLVDEVFNNAMDVLNEED
RRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMPART
VLFTAPRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEKVSPAVGRDIVKGK
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQANIPELYNKVKNLQQLHDSI
VIDKVVQVSSYHQIRDQLDKLGNEFRMYLTKPEYLIPFLQPGRLVKVKNETAEFDWGIIV
NFKKKSPNNPMKDKTVIIVDILLHISSQSTEGNPLPCKDGDEGDMEVVPVLHSLISQVSS
LRVFYPKDLRPADNRKSVLKTIQEVEKRFPDGPPLLNPITDMHIVDPGFKDVIKKIETLE
ERLFAHPLHKDPELPDLSQRFLHKEKIGEDLRQAKTDLKRAKSVLQMDELKCRKRVLRRM
AYCTAADVIELKGRVACELNGADELLMTEMIFNGLFNALSVPQMVALVSCFVCDEKSNEM
PKSTEELSGPLRQMQDLARRIAKVTTDAKLEIDEEAYVEKFKPYLMDVVYAWCKGANFLQ
ICKMTDIFEGSIIRCMRRLEEILRQLCQAAKNIGNSDLENKFSEGIKVIKRDIVFAASLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgatctgtccgaaaaacttaatactgcctaaagtgaatcgtttaaacgtggcg
cccgaaaacttagctcatcaatatggccgacgtgctaccacatgtaccctccacaagaag
gccactaatgttaaaattaaaagaaatctcgtggagttacaaactacaaaatatttgtac
tttgtaatggctgattttagcgaagatctttttcaagtgttcgaagagagcagtgaagat
gtggttcagttttctggggatgctattcctttcgaagagtcgacagcaacagcaaaaaag
gaggagcaaaccgatcctagcattaaaagagatctcgaggaaattgaggaaccatttgga
aaaagacagaggacagattccataaccgaagacataaacttggaagagttggcaacacgt
ataacaatacatactatagaaacaattgagtcctgtacccatgaagtggctgtaccacct
gcgcaggattacattcctttggaaaagaaatcttcgctaccggccaaagaatataaattc
gttttagatccatttcaaaaggaagcaattttgtgcatcgaaaacaatcaatcagtactc
gtatctgcacatacttcagctgggaaaactgttgtagctgaatacgccatcgcatgttcc
ttgagagacaagcaacgagtgatatatactacacctataaaagccttgagcaatcaaaaa
tatagagaattttttgaagagtttaaagatgttggattgattactggcgatgtcacaatt
aatcccactgccagcgttctgattatgaccacagagattttgagaaatatgctctacaga
ggttctgaggtgatgagggaggttggttgggttatttttgatgaaatacattatatgcgt
gacaaagaaagaggggtggtatgggaagaaaccttgattcttctacctgacaatgttcac
tatgtgtttctatcggcaaccatcccaaatgccaggcaatttgctgaatgggtagcgcat
ttacacaatcaaccttgccatgtagtatatacagattaccgtccaacacctttgcaacat
tatatatttccggccggtggcgatggaattcatttggttgtcgacgaaagcggcgaattt
aaagaggaaaatttcaacagagctatgaattgtctgcaccaaggcggcgaagcctcaaaa
ggggatcaaaaaggtcgaagaggcggaatgcgctctaatgctggtcaaaccaatattttt
aaaattgtcaagatgattatggagcgaaactttgccccagttataagtttcagtttctca
aagaaggactgcgaaatttatgccatgcagatggcaaagttggatttcaacaccatagat
gaaaagagattggttgatgaagtattcaacaacgcaatggatgtactcaatgaggaagac
agacgtctacctcaagtagaaaatgtgcttccgttacttaggcgtggcataggaatccat
cacggtggccttttaccaatattgaaggaaaccattgaaatactgtttgccgaagggtta
atcaaagctttatttgcaactgaaacatttgccatgggccttaatatgccagcaagaact
gtactgttcactgcaccaagaaaatttgatggtaaagattttcgatggataacctcgggt
gaatatattcagatgtcgggtagggccggtagacgaggactggacgagaaaggaatcgtc
attttaatgatagatgaaaaagtaagcccagctgtcggcagagacattgttaaaggaaaa
cctgatccgatcaactcggcgtttcatttgacgtacaatatggtccttaacttgttgaga
gtagaagaaataaatccagagtatatgctggagagaagtttctttcagtttcaaaaccaa
gcaaatataccagagttgtacaataaggttaaaaatttgcaacaactacacgattctata
gtgatcgataaggttgtccaggtttcatcatatcatcagatcagggatcaactagacaag
ctaggaaatgaatttcggatgtatctaacgaaacctgaataccttattccattcttacaa
cctggtagattggtgaaggttaaaaatgagactgcagaatttgattggggtatcattgtt
aatttcaaaaagaagagtccaaacaatccaatgaaagataagactgtaatcattgtggac
attctgcttcacatatccagtcagtctactgaaggaaatccacttccatgtaaggatggt
gatgagggagatatggaagttgtaccagtattacattcattaatctcacaagtcagttca
ctacgggtattttatccaaaagacctaagacctgccgataacagaaagagtgtattgaaa
actattcaagaagttgaaaagcgatttccggatggtccaccgttattaaatccaataact
gatatgcatatcgtagatccaggtttcaaggatgtcattaaaaaaattgaaaccctggag
gaaagactatttgcccatccattgcataaggatcctgaattaccagatctatcccaacga
tttttgcacaaagaaaagattggcgaagatctaagacaagcaaaaaccgatctcaaacgc
gccaagtccgtattgcagatggatgaactgaaatgtagaaagagagtcttacgcaggatg
gcttattgcacagcagctgatgttatcgagttgaaaggtcgggtggcttgtgaattaaat
ggcgctgatgaattgttgatgactgagatgatttttaacgggttgttcaacgcattgagc
gtaccacaaatggtggctctagttagttgctttgtttgcgacgagaagagtaatgaaatg
cctaaaagcacagaagagctaagcggacccctaagacagatgcaggatttggctaggcga
atagctaaggtaaccaccgatgctaaactggagatagatgaagaagcatacgtggagaaa
tttaaaccatatctaatggatgttgtgtacgcgtggtgtaaaggtgccaatttcttacaa
atctgcaaaatgactgatatatttgaagggtctataataagatgtatgcgtcggttagag
gagattctgagacaactctgtcaggcagcaaaaaatatcggaaactcggatttggaaaat
aaattcagtgaaggcataaaggtgataaaacgagacattgttttcgctgcctccttgtac
ttgtga
DBGET
integrated database retrieval system
