Neodiprion pinetum (white pine sawfly): 124219835
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Entry
124219835 CDS
T08966
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124219835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124219835
Enzymes [BR:
npt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124219835
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124219835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Motif
Other DBs
NCBI-GeneID:
124219835
NCBI-ProteinID:
XP_046483954
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All DBs
Position
5:6942562..6958859
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AA seq
782 aa
AA seq
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MEVTRANFQNVLDDLDSVIENASFLAIDGEFTGLNSGPDTSAFDTPAQYYAKLRSGSMDF
LLVQFGLSIFTYDADKKKYIQQSYNFYVFPRPLNRAAPDCRFMCQASSMSFLADRGFDFN
KLFNKGIPYLTSAEEEKLGKKLEERQKARDDGLELIPIPDDDRPQIEEICTRINDFYNSE
AEELTIDRCNAFIRRIIHQEARMRWPNKLRLEGKTDSSGQWLVVQKMGSKEEEEKKEVER
KEKEQNDIKQAVGLSALLRKISDSGKLIVGHNMLLDLCHIVHQFFSTLPESYHEFKSLVH
CLFPKLLDTKIMCQSSQFKESIPCSVLNALHETVSKSPYCIPEVDVVPDRSYTSSVEKYH
EAGYDAYITGLCFISLSNYLGTLQTPEISVVLPDSPLLNPFINKLLITRLKDFPYIDLTG
KDPNPRRDHVFHITFPKEWKLSDISQLFSPFGGIYVSWLTDTTAYVGLNRRDQSSAVNKH
NFANQNIRLQKYAEHQALIEGKNHSPAHQGDRKRKLSSSDNITATENTGRKPEVNGEQGQ
TVDNEGWETASDSPKMLNEDKNDRKDEEEEEEGEETEVRKSNTDAIGDAENSASFLKLPE
SEVAKKHSLARAKSNPICCSYEAKSLLGEKFDRSNNSWIVAGKRFVKSPGSTPSASPKAK
RSPSKKQHARQKPCCGELSSSSNLTGVEKVDKFDKDSVNDDRNNLDKISNDAQTDNNQNF
RRRDRNAVSNSECDKVELKKPSIKLLRSGRKRSENITSTRSMLIRIAQIVFVLLLIYVVI
KF
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacgcgcaaattttcagaatgttcttgatgatttggacagcgttattgaa
aatgcatccttcttagctatcgatggagagtttacaggattaaattctggacctgatacc
agcgcctttgacacacctgctcagtactatgccaagcttagatcaggatcgatggacttt
ttgctagtacaatttggattgtccatttttacttatgacgcagataaaaagaaatacatt
cagcaatcgtacaatttttatgtatttccaagacctttgaatcgtgcagctcctgactgt
cgattcatgtgccaggcatcttctatgtcgtttcttgctgatcgaggatttgatttcaac
aaactgttcaataagggtataccttatttgactagcgccgaggaagagaaacttggtaaa
aaacttgaagagaggcaaaaagccagggacgatggtcttgaattgattcccatcccagat
gatgacaggccgcaaattgaggaaatatgcacccgaatcaatgatttttacaactcagag
gcagaagagttgacaattgataggtgcaacgcattcatcaggaggattatacatcaggaa
gcaagaatgcgatggccaaacaagctcaggttagagggcaaaacagatagtagtggacaa
tggttggttgtgcaaaaaatgggaagtaaagaagaggaagaaaagaaggaggtggaacgg
aaagagaaggaacaaaatgatatcaaacaagcagtgggcttgagtgctttgttgagaaaa
atttccgattctgggaaactgattgttggtcacaatatgttgctagatctctgccacata
gtccatcagtttttctcaacccttccagaaagttatcatgaattcaaatcgcttgttcac
tgcctgtttccaaagttattggacactaaaataatgtgtcagtcatcacaattcaaagaa
agcattccatgttcggtattgaacgctttacacgaaactgtgagcaaatcgccctactgt
ataccagaagtggatgtcgttccagatcgcagttacacctcttcagtcgagaagtatcac
gaagctggctacgatgcttatataactggattgtgctttatttcgctgtccaattaccta
ggcacgttacagactcccgagatttccgttgtgctgccggactcgcctctgttgaatccg
ttcataaacaagctgctcataacaaggttaaaggatttcccttatatagacttgactgga
aaagatcccaatccacggagagaccatgttttccatattactttcccaaaagaatggaaa
ctcagcgacatctctcagctgtttagccctttcggtggcatctacgtgtcttggttgaca
gacacaacggcctacgttggtttaaatcgacgagatcagtccagcgcggtgaataaacac
aatttcgcgaatcaaaatatacggctgcaaaaatacgcggagcatcaggctttgattgaa
ggtaaaaaccatagccccgcccaccaaggtgaccgaaaacggaagctctcgtcgtctgat
aatattacggctacggagaatactggcaggaaaccggaagtgaacggcgaacagggtcag
accgtcgacaacgagggttgggaaacagcttcagactcgccgaagatgttaaacgaggat
aaaaacgatcggaaagatgaggaggaggaggaggagggggaggagacggaggtgagaaaa
tctaataccgatgcaatcggcgacgcggagaattccgcgagctttctcaaacttccggaa
tctgaagttgcgaaaaagcatagcttggcgagggccaagtcgaatccgatatgctgtagc
tacgaggcgaagagtttacttggggagaaatttgaccgttcgaataattcgtggatagtg
gcggggaagaggtttgttaaatcgcccggatcgactccgtcggcaagtccgaaggcgaag
agatcgccgagcaagaaacagcacgccaggcagaaaccttgctgcggtgaattgtcatct
agttcaaatttgacgggggtggaaaaagttgacaagttcgataaagattcggttaacgac
gataggaataatttggataaaatatccaacgacgcgcaaacggataacaatcaaaatttc
agacggagagatcgcaacgccgtgtcaaattcggaatgcgataaggtcgagttgaaaaaa
ccgtcgataaaattattaagaagcggccgcaaacggtccgaaaatataacatcgaccaga
agtatgcttattcgaatcgcccagatagtcttcgtcctccttctcatctacgttgttatt
aaattctga
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