Neodiprion pinetum (white pine sawfly): 124220286
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Entry
124220286 CDS
T08966
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124220286 (Upf2)
03015 mRNA surveillance pathway
124220286 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124220286 (Upf2)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124220286 (Upf2)
mRNA cycle factors
P-body specific factors
124220286 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
OrfB_IS605
SHPRH_helical-2nd
Inhibitor_I53
Motif
Other DBs
NCBI-GeneID:
124220286
NCBI-ProteinID:
XP_046484894
LinkDB
All DBs
Position
5:25716403..25720725
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AA seq
1166 aa
AA seq
DB search
MSEIQNDSQEAEKVSPDVSEVDKEFLMEYIREAEQRFSTKEKIRLANLNVSRPPDSHFSK
LDSSLKKNTTFVKKLKNFCTAQLDTVLKDMSNLNLTKYISEVATALVEAKLKMTDVAPAV
KVCSYLHQNYAEFGAHFFENWQRILSFKVGDKISNPSKLRVDLRFYAELVNAGIFTHKQG
LPLLGSVLTVLINMDKEDHNNVTIILSFCRHCGEDYAGLVPRKIRELSELWPGEPLPKSR
LLSADKQQNVRTLLRDYYNSLCKHLLKEHKELQAFEKQNRKILQTRGELSSERKEKLETL
QVSYERLFSGVQSFSETLDESMPELPVDMEVKTEAEESFKMTCDGEDSGTTTEDMWGDEE
TKRFYEVFPDLTVFLPGSYSKEVPVLKPDENQLTEEALDEELALEELEDTDKVAEEPEAE
VEETHVTNISNKILLDAFLTHLPNCVNREMIDNAAVDFLMNLNTKHNRKKLIKALFGVSR
IRLDLLPFYSRLAGILYPVMPDVANDLCLMLKQDFKYHVRKKDQINIESKIKVVRYIGEL
VKFKLYSKIEALYCLKVLLHDFTHHHVEMACNLLETCGRFLFCSPDSHQRTKIYLEQMMR
KKAVTALDSRYVTIIENAYYFVNPPESTGGIAKKERPPMHEFIRKLLYQDLSKANTDKVL
RLMRKLDWEDDNISTYAIKCLVAAHNVKYLNIRCVGSLLAGLVAHYEAVGPYVVDGVLED
IRLCMEVNLPKYNQRRIAMVKYLGELYNYRLVESGDIFRTLYLLITFGVSTDHTVPTLLD
PPEHLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLIFFQHYYWFKRSDPVWTVENPFPVS
VDYMYRDTLTMLRPKMQLFQGFKEARCAVDELRNTLYPSLARIEVKEDEQYSGEPRASDS
NNESEAMGAIPEVDEEVTTPTPIASGNGSGDAKGILEELHFDESEEYSEAQSEDDWATDG
YREGNHGTQENTQGEFSLSAGVSEGVVMDPSELDAALPMAPRRVGCPEDDDFLSALDKMV
SDNIQDRMRDSVKPQQVDISVPLHVKSTKKTYEQLREGPSDNTTVDFVLMLRKGNKQQYK
NLAVPVSSELAMNLRNREQEQKEEKERVKRLTLNITERQEEEDYQETINQGTRPVTVNLN
RERRQKYNHPKGAPDADLIFGPKKIR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagattcaaaatgacagtcaagaggcggaaaaagtatcacccgatgtgtcagag
gtggacaaggagtttctgatggaatatatcagggaggcggaacagcgtttctcaacaaag
gaaaagatccgattagcaaacctaaatgtgtcccgtccgcctgattcgcatttcagcaaa
ctggattccagcttgaagaaaaatactacatttgtcaaaaagctcaagaacttttgtacg
gctcagctggataccgtcctgaaagatatgagcaatttgaatttaacgaaatatataagc
gaagtggcgacagctcttgtagaggctaaattgaaaatgactgatgtcgcgccagctgtg
aaggtttgcagttacctgcaccagaattatgccgaatttggcgctcatttctttgagaat
tggcagaggatattgagtttcaaagtcggtgacaagatttcaaatcctagcaagctaagg
gtagatttaagattttacgctgagttagtcaatgctggcatatttacgcacaagcagggt
cttccgcttttgggcagcgtgctcaccgtactcattaatatggacaaagaagaccacaac
aacgtaacgataattttgagtttttgccgtcactgtggtgaggactatgcgggtctggta
ccaagaaaaataagagagttgtctgagctatggccaggcgagcctttgcccaaaagcaga
ctactgtctgccgacaagcagcagaatgttcgaacactactgcgggactattacaactct
ctgtgcaaacatctactcaaggaacacaaagagcttcaggcattcgaaaaacagaatcga
aagatactgcagaccagaggtgaattgagctcagagaggaaagaaaagttggaaactctg
caggtatcctatgagcgtttgttcagtggcgtgcaaagcttttcagaaacattagacgaa
agcatgcctgaactgccagtcgacatggaggttaaaacagaagcagaagagtctttcaag
atgacctgtgacggtgaggatagcggcacaacaacagaagatatgtggggcgatgaggag
actaagagattttacgaagtattcccagacctcaccgtatttttgcctggttcttattca
aaagaagtacctgtgcttaaacctgacgaaaatcaactaacagaagaggctctggacgag
gaattggcgctggaagaactcgaggacacagacaaagttgccgaagagccagaggcagag
gttgaagagacacacgtcacgaatatcagcaacaaaatattattggacgcgtttctgact
caccttcccaattgtgttaatagagaaatgattgacaatgcagctgttgatttccttatg
aatttaaacacgaagcacaatagaaagaaactcattaaggccctgttcggtgtgtccaga
attcggctagatttgctgcccttctactcacggcttgccggcatcctttatccagttatg
ccagacgtcgctaatgacctctgtctaatgctcaagcaagattttaagtaccacgttaga
aagaaagaccagatcaacattgagtcaaaaataaaagttgttcgttacatcggtgagctt
gttaagttcaaactgtactcaaaaattgaggcactttactgtcttaaagtactattgcac
gatttcactcatcaccatgttgaaatggcttgcaatctattagagacgtgcgggaggttc
ttattttgttccccagactctcatcaacgcacaaaaatctacctggaacaaatgatgcga
aaaaaggcggttactgctttggattcgcgttacgtaacgataatcgagaacgcttactac
tttgttaatccaccagagtcgactggcggtattgcaaaaaaagaaagaccacctatgcac
gagtttattagaaaactactttaccaggatctgtccaaggcaaatactgacaaggtattg
agactaatgagaaaactggactgggaggatgacaatatttctacgtatgctattaaatgc
cttgtagccgcccataatgtaaagtacctgaacataaggtgcgttggtagtttactagca
ggtttggtggcgcattatgaggctgttggcccttacgttgtagatggcgttctggaagac
ataaggctgtgcatggaggtaaatttgccaaagtataaccaacgtcgtattgcaatggtc
aagtacctcggggaattatacaattatcgcctagtcgagagcggtgacatcttccgcact
ctctacctgctcataactttcggcgtttctacagatcatacagtacctacgctccttgat
ccgcctgagcatttgttcagaatccgtttggtctgcacgctcctggaaacatgtggtcaa
tactttagtggtggttctagtaagaagaaactggattatttcctaatattcttccagcat
tactactggttcaagcgtagcgatcctgtatggaccgtcgaaaatccatttccagtcagc
gtcgattatatgtatcgtgacacactgacaatgcttaggccaaagatgcagctgttccaa
ggtttcaaagaggcccgttgtgctgtagatgaattgcgcaacaccttgtacccaagtctc
gccagaattgaagtaaaggaggacgaacagtattcaggtgaaccacgcgcatccgacagc
aataatgaatctgaagcaatgggagctataccagaggtcgatgaggaagtgacgacacct
acgccaatagcttcaggtaacggaagtggagatgccaaaggtatactcgaagaactgcac
ttcgatgaaagtgaagagtattctgaagcacagtcggaagatgactgggcaacagatggt
tacagagaaggtaatcatggtacacaggaaaatactcaaggggagttcagtctatcggca
ggcgtgagtgagggggttgttatggacccctcagaattagatgctgcgctaccaatggcg
ccaaggcgggttggctgcccagaagatgacgactttctttcggcccttgacaaaatggtg
tctgacaatatccaggaccggatgcgtgactcggtgaagccacaacaggttgatatatct
gtgccactccatgtcaagagcacaaaaaagacgtatgaacaattacgtgaaggaccgtcg
gacaatacgactgtggactttgtactcatgcttaggaaaggtaataagcagcagtataaa
aatcttgctgttcctgtgtcttccgaactcgctatgaatctcaggaatcgggaacaagaa
cagaaagaagaaaaggagagggtgaagagattgacactaaatattaccgaaagacaggag
gaagaggattatcaagagactataaatcaaggcactagacctgttaccgttaatctgaac
agagaacgtcgacaaaagtacaatcacccaaagggtgcgccggatgctgatcttattttt
gggcccaaaaaaattcgatga
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