Neodiprion pinetum (white pine sawfly): 124220323
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Entry
124220323 CDS
T08966
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124220323
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124220323
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124220323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
Helicase_C
DEAD
OB_NTP_bind
HA2_C
ResIII
HA2_N
ATPase
nSTAND3
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
124220323
NCBI-ProteinID:
XP_046484972
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Position
5:26325878..26332161
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AA seq
1148 aa
AA seq
DB search
MSYRKMHDEERTRRSSAKRKRHEDMRSRRNSDGERSDPRRDERSDFSFQKYRYELSKVFS
ANPNLVQDPEDFWKFVGKYEVVEKKRGSMGAEDKLLNDSQQSRDPTVYHRSHCLNVRVNL
SLGELFARVPPAKELTDSKLCTFRDVINLYLDFKQKEKFAKLKKLRESQANLPVYQYRDE
IVEAVKNERVVIIAGDTGCGKSTQVPQYLYKGGFGRIACTQPRRIACISLAKRVAFETLT
ENRTEVGYQIRFEKQRNQDTKITFITEGLLLRQVSGEMGLSHYDVIVLDEVHERHLHGDF
LLGIMKCIIHQRQDLKLVLMSATINIQLFSNYFAKEDVKVIQVPGRLYPIQLNYRPIAVD
DLRQKSDRFNPSPYVQIMQMIDKKYPQDEKGDLLVFLSGMSEITAVVDCAKEYASKTNNW
IVLPLHSTLSIAEQDKVFDYAPDGVRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDP
ICKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYTALEKYSTPELQRVPLDSL
LLQMVAMGLPDSRKFPFIEPPPPESIENSILSLKEHGALTDDEKLTVIGKTLSRLPVDIT
IGKMLVMGSLFHQVEPVLSLAAALSIQNPFTNRAYRDTECENSRKKLESDHGDPITLLNA
YKEWLEVKQESSREVRGNSSTSRKWCKRRGLEEQRFYEMTKLRTQFKELLQDCGLLKNLQ
EPSSSMTSTERMLRHGEMKLLKTLKRTYKQTAPRKRKELKLDLFDIQMEDKDDNDGEIDI
KDVEFRMRNDSSQVQNLLTAATACSYKDLMMLKLILCSGLYPQFACADEFNYCKSTSEQL
FHTKAKPYIALHPMSFFGNHPQVLQLEEPDIMSIPAFKSKSPLSPKHQLLTYLSLLETTK
PYLVNTMRMPAAQTLLLFAHEIDTNYTFSILVCDSWLKLEFPMPDSGQTLLMKATKLRQK
WDMLLTHRLEEASPLITSKKDTSQVEYELNQELIQFMHTTVPYTIKRLLPADLKIIYVGC
GENYVEVKPNPFQSDFECETNSGKGGVRLTNNITFNCLVESDWSDKLAVDMIETEWHCTN
CGITTPMTSIEKLQHQSNCFVINEDDHQASIEPPTEKKPNSKPYDCPECKKTIYLTPIEI
LRHKKQHL
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgagctatagaaaaatgcacgacgaagaacgaacgagacgttcatctgctaaacggaaa
agacacgaagatatgagaagtaggaggaattctgatggagagagatccgatccacggcgg
gacgagcggtcggatttttcattccagaaatatcgctacgagctgagcaaagttttctcg
gcaaatcctaacctggtgcaagacccagaggatttttggaaatttgtaggaaagtatgag
gtggttgagaaaaaacgcggtagtatgggagcggaggacaagttgctcaatgattcgcaa
cagtcgagagacccgaccgtctaccacaggtcacactgcttaaatgtcagagtgaattta
agtttaggagaactgtttgcacgagttccacctgcgaaagaattaacagacagtaaatta
tgcacatttcgagacgtaatcaatctctatctagactttaagcagaaggagaaatttgct
aagttgaaaaaactcagggaaagtcaagccaatctgccggtctatcaataccgggacgag
atcgtcgaagctgttaaaaatgagcgtgttgttatcatagctggggacacaggatgtgga
aagtctactcaagttcctcagtacttgtacaaaggtggattcggaagaatcgcctgtact
caacctcgcagaatagcttgcatatcactggctaaacgtgtcgcatttgaaactttgact
gagaaccgtacagaagttggctaccagatcaggtttgaaaagcagagaaatcaggacact
aagatcacgtttattaccgagggactgctgctgcgccaggtatcgggtgaaatgggatta
tctcattacgacgtaatcgtgctcgacgaggtgcacgagagacatttacatggtgacttt
ttgttaggaattatgaaatgtataatacatcagagacaggatttaaaactagtgctaatg
tctgctacaataaatattcaactgttcagtaattactttgccaaagaagatgtcaaggtg
atccaagttccaggtagactgtatccgatacagttgaactatcgaccgatagcagtagac
gatttgcgacaaaaatccgatagattcaatccaagtccgtacgtgcaaatcatgcaaatg
attgacaagaagtatccacaagacgaaaagggcgatttactcgtattcctcagcggtatg
agcgagattactgcagttgttgattgcgcaaaggaatatgcttctaaaactaacaactgg
atagtgttgcctttacacagtactttgtccatagctgaacaagacaaggtgtttgattac
gccccagatggggttcgtaaatgcattgtctctacaaatattgctgaaacgtcaataacc
attgatggtatcagatttgttgtggacagtggaaaggtgaaggaaatgagctatgatccg
atctgcaaaatgcaacggttgaaagaattttggatcagtaaagcgagcgcagagcaaaga
aaaggaagagctgggagaacgggacctggtgtttgctacaggctttattctgaagaggaa
tacacagcgttagagaaatactcgactcctgaacttcagcgagtgcctctggactcctta
ttattacaaatggttgccatggggctaccagattcgcggaaatttccgtttatagaacct
ccaccgccagagagcattgaaaactcgatactttcattgaaagaacacggtgctttaacc
gatgatgaaaaactaactgtgattggcaaaacactttcgagactcccagtcgatataact
atagggaaaatgttggtgatgggctcactatttcaccaagtcgaacctgttttatcgctc
gctgctgctctcagcattcaaaatccgttcacaaacagagcatacagagacactgagtgt
gagaactctaggaagaaactagaatctgaccatggggatcctataactttattgaacgcg
tacaaagaatggctggaagtaaaacaggaaagcagtcgtgaagtcagaggaaattcgagt
acgagtagaaagtggtgcaaacgacgagggctggaggaacaaagattttatgaaatgacc
aagctacggacgcaattcaaggaactgcttcaagattgtgggttgctaaaaaatctccag
gaaccaagctcctcgatgactagcacagagcggatgctgaggcatggagaaatgaagtta
ctgaagacgcttaagcgtacttacaagcaaacggcacctagaaaacgtaaagagttgaag
ttagacttgtttgatatacaaatggaagacaaagacgataatgatggtgagattgacata
aaggacgtagaatttcgcatgagaaacgactcgtcgcaggtccagaaccttcttactgca
gcaactgcctgcagctacaaagacttgatgatgctcaagttaattttgtgcagcggattg
tatccccaattcgcttgcgctgatgaatttaactattgtaaatcgaccagtgagcagcta
tttcacacaaaagccaagccctacatcgctctccacccaatgagctttttcgggaaccat
ccacaagtcttgcaacttgaagaaccagacatcatgtcaatcccagcattcaaatcaaag
tctccgctcagcccgaagcatcaactgctaacctacttgtcactcctagaaacaaccaaa
ccatatttagtaaatactatgaggatgccagctgcccaaacgctactgctttttgcgcat
gaaattgataccaattacacattttcaattttagtctgtgactcgtggctaaaattagaa
tttccaatgccggacagcggacaaacattattgatgaaagccactaaactaagacagaaa
tgggacatgcttttaacccacagattggaagaagcctcgccgttaatcacttccaaaaag
gatactagccaagttgagtacgaacttaatcaggagctgatacagttcatgcataccaca
gtaccctacactatcaaacgcttgttgcctgccgatttgaagataatttacgttggctgt
ggtgaaaattacgttgaagtaaaacccaatccctttcaaagtgactttgagtgcgaaacg
aatagtggaaaaggtggcgtccggttgacaaacaatatcaccttcaactgcctcgttgag
tcagactggagtgataaattagcggtagatatgatagaaactgaatggcactgcacaaac
tgtggcatcacgactccaatgacgagcattgagaagttgcagcatcagagtaattgcttc
gtaataaacgaggatgaccatcaggcttctattgaaccacccactgagaaaaaaccaaac
agcaaaccctacgattgtccagagtgcaaaaaaaccatttatctcacgcctatagaaata
ttaagacataaaaaacaacacttgtaa
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