Neodiprion pinetum (white pine sawfly): 124220494
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Entry
124220494 CDS
T08966
Symbol
Cbp80
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03015
mRNA surveillance pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124220494 (Cbp80)
09122 Translation
03013 Nucleocytoplasmic transport
124220494 (Cbp80)
03015 mRNA surveillance pathway
124220494 (Cbp80)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124220494 (Cbp80)
03041 Spliceosome [BR:
npt03041
]
124220494 (Cbp80)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
124220494 (Cbp80)
Spliceosome [BR:
npt03041
]
Common components
Common spliceosomal components
Cap binding complex
124220494 (Cbp80)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Dehydrin
Motif
Other DBs
NCBI-GeneID:
124220494
NCBI-ProteinID:
XP_046485427
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All DBs
Position
5:25835532..25840229
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AA seq
794 aa
AA seq
DB search
MSRRRAHDDDDGYDRVYKKRRRVSENQEIEDRLESLILRVGEKSTSSLESNLEGLASVLE
ADLGVFRTKILRILTDCAIKMPEKCTIYTTLVGLLNAKNFNFGGEFVDYMVKNFKDSLKS
CKWNAARYSLRFLADLVNCHVLSCGSLMQLFDNMLDTANEDSVPQVRRDWYVFAVLSTLP
WVGRELYEKKEQELDHLMVTIEVFLNKRSKKHQPALKVWSSDTPHPQEEYLDCLWAQVRK
LRQDNWAEKHIPRPYLAFDSILCEALQHNLPTLLPPPHHESYTYPIPTVVFRMFDYTDCP
AEGPLLPGSHAIERFLIEEHLRQIIDNHFFERKDCAAQLLNFPYKAKIPLDYSIVEVMFG
ELFRLPSPKHLEICYGSILIELCKLQPSTMPQVLAQATEILFRRIDSMAAAAFDRFVWWF
AYHLSNFQFRWSWEDWDSCLQRDPEHPRPKFIKEVLLKALRLSYFQRIRDMMPETYAELI
PLPPEPIYKYTSEGASTLPGTSAAHELVVSIRRKCTPEEVLTVLNTLPGQGDNEESNTFN
PLKIDVFVQTLLNLGSKSFSHSFAAIGKFHYVFKALAESEEAQICILRNMHALWKNHYQM
MVVLSDKFLKTGIIECSAIANWIFSREMTSEFTKLYIWEILHLTIRKKNKHVIKLNTEVT
EAREKLRRAESRSGSSSEDEDNTKDKSGERPSEDVVERMEEKLEAAQADQKNLFLIIFQR
FIMILSEHLVRCDTDGIDYNTHWYRWTIGRLQQVFLAHHEQVQKYSSTLETLLFTPDLDP
HILDVFHQFVSLRA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaggagagcacatgacgatgacgatggatacgaccgcgtctataagaagcgg
aggagggtatcagagaatcaggaaattgaagatcgcctagaatcgcttatattgcgagtg
ggtgaaaagtcaacttcgtcattagaaagtaatttggaagggttagcgtctgtgctagaa
gcggatctcggtgtgtttcgtactaagattctccgaatattgactgattgcgctataaaa
atgccagagaaatgtacgatctacacgacgctggtggggctgctgaatgcaaagaatttc
aactttggtggtgaatttgttgactatatggtgaaaaattttaaagattctttaaaaagt
tgcaaatggaacgctgctagatattcgctccggtttcttgctgacttagtcaactgtcac
gttttatcttgcgggtcgcttatgcagctctttgataatatgttagacacggcaaatgag
gacagcgtacctcaagttagacgagactggtacgtttttgctgttctctcaaccctgccg
tgggttggtcgagagttatatgaaaagaaagagcaagaactggatcaccttatggtcacc
attgaagtatttttgaacaaacgaagtaagaaacatcaacctgctctaaaagtatggtcc
agtgacacacctcaccctcaggaagaatatttggactgtctctgggctcaagtacgaaaa
ttgaggcaggataattgggcggaaaaacacattcctcgaccatatcttgctttcgactct
attttatgtgaagctctacaacacaatcttccaacgcttctgcctccaccacaccatgaa
tcttacacgtacccaataccaactgttgtatttcgcatgtttgactatactgactgtcca
gcggaagggccactgctgcctggcagtcatgctatagagagatttcttatcgaagaacat
cttcggcaaattattgataatcacttttttgaaagaaaagattgcgcggcgcaattattg
aactttccatacaaagcaaaaattccacttgattattctattgtggaagtaatgtttgga
gaactcttcagattaccatctccaaaacatttggaaatctgctatggatcgattttgatt
gaactttgtaagttgcaaccatcgactatgccacaggttttagcacaggctaccgaaatt
ttattccgtcgcatcgacagcatggctgcggcagcattcgatagatttgtttggtggttt
gcctatcatctgagcaacttccaatttcgttggtcatgggaagattgggactcatgcctc
cagcgtgaccctgaacatcctcggcctaaattcataaaagaagtgctgctgaaagcattg
agactatcctacttccaaagaattcgcgatatgatgccagaaacttacgccgaactgatc
cctttgcctccagaaccaatttacaagtacacttccgaaggcgcaagcacacttcctgga
acttctgcagcccatgaactagttgtttcaatacgccgcaaatgcaccccggaagaagta
ttgaccgttttgaataccttaccaggtcaaggagacaatgaggaatcaaacacattcaat
ccgttgaaaattgacgtatttgtacagacgttgcttaacctggggtcaaagagcttcagc
cacagtttcgccgctattgggaagtttcattatgtattcaaggctctggccgaatcagag
gaggcacaaatatgcattctaagaaatatgcatgccctatggaaaaatcattatcaaatg
atggttgtactctcagacaaattcttaaagactggaataattgaatgcagtgctatagcc
aattggatattttctcgggaaatgacatctgaatttactaaactctacatctgggaaatt
cttcatttgacgatccgtaaaaagaataaacatgtcattaaactgaacacagaagtgacg
gaggccagagaaaagttacgaagggcggaaagtagatctggatcgtcttcggaagatgag
gacaatactaaagataagtcaggagaaagaccatctgaagacgttgtagagcgaatggaa
gaaaaattggaagctgctcaagcagatcaaaagaatttattcctcatcatttttcagcgt
tttattatgattctttccgaacatcttgttagatgtgatacagatggcatcgattacaat
actcactggtacagatggactattggaaggttgcagcaggtatttttggctcatcacgaa
caagtacaaaaatactcgtcaacactggaaacacttttgttcacgccagatctggatcca
cacattcttgacgtatttcaccagtttgtttcgttacgtgcataa
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