Neodiprion pinetum (white pine sawfly): 124220538
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Entry
124220538 CDS
T08966
Name
(RefSeq) DNA polymerase beta isoform X1
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124220538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npt03400
]
124220538
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124220538
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
124220538
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
124220538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
NTP_transf_2
HHH
HHH_3
Cdd1
HHH_2
MG3
DUF4332
PS_pyruv_trans
Autophagy_act_C
Motif
Other DBs
NCBI-GeneID:
124220538
NCBI-ProteinID:
XP_046485554
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All DBs
Position
5:25643927..25647068
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AA seq
337 aa
AA seq
DB search
MSKRKAPDNADNLNSDLSDFLIELANYERNVSKNIYKYNAYRKAAGTLAALSYRVKNGEE
AKKLPGVGEKIAKKIDEFLQTGKLQKLEKINADGISAPINLMTRVSGIGPSKAKELVDAG
IKTLEDLRKNQDKLTHHQKIGLKYFQDFEQKIPREEVRRLETSLKSVIANLDKEYILTIC
GSYRRGKDESGDIDVLITHPKFTSESMDAKNKGGMLKNIVKYLEKEGIITETISIGNTKF
MGVCRDPAESSKPFRRLDIRVTPSDHYYCAVLYFTGSDLFNKNMRAHALKKKFTLNEYTL
KHLTLEGLPGNAELITSEEDIFSKLGLPYKKPEERNS
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacgaaaggcacccgacaacgcagacaatctaaacagtgatctctccgatttt
ctgatagagctagcaaattacgagcggaatgtcagtaaaaacatctacaaatataacgct
taccgtaaagctgctggaactttggctgcactatcataccgagtgaagaatggtgaagag
gcaaaaaagttgccaggggttggagagaagatcgcaaaaaaaattgatgagttccttcaa
accggaaaattacaaaaacttgaaaaaattaatgctgatggcatcagtgctcctataaac
ttgatgaccagggtatcaggaattggaccatcgaaggcaaaggaattggtagatgctggt
ataaagactttggaagacctgagaaaaaaccaagataaattaacacatcatcagaaaatt
ggtttgaagtactttcaagattttgaacagaaaattccaagggaagaggtgcggcgactc
gagaccagtctcaaatcagtgattgctaatttagacaaagagtatatacttacaatctgt
ggtagttatagacgtggaaaggatgagagcggcgatattgacgtcttgataacacatcca
aaattcacatccgaaagtatggatgcgaaaaataaaggcggtatgctaaaaaatattgtt
aaatatcttgaaaaggagggaataatcacagagactatctctatcggcaacacaaagttt
atgggtgtttgccgagatccagcagaatcgagtaaaccatttcgccgacttgatataaga
gttactcccagcgatcactactactgtgccgtattatattttaccggcagtgatttattc
aataaaaatatgcgggcacacgcacttaaaaagaaatttacgttgaacgagtataccttg
aaacatctaacattggaagggttaccagggaatgctgaattaatcacaagtgaagaggat
atcttcagtaaacttggacttccatacaaaaaaccggaagagaggaattcataa
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