Neodiprion pinetum (white pine sawfly): 124220555
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Entry
124220555 CDS
T08966
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03030
DNA replication
npt03410
Base excision repair
npt03420
Nucleotide excision repair
npt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124220555 (DNAlig1)
03410 Base excision repair
124220555 (DNAlig1)
03420 Nucleotide excision repair
124220555 (DNAlig1)
03430 Mismatch repair
124220555 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npt03032
]
124220555 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124220555 (DNAlig1)
Enzymes [BR:
npt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124220555 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
124220555 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
124220555 (DNAlig1)
DNA replication proteins [BR:
npt03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
124220555 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
124220555 (DNAlig1)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
124220555 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
124220555 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
124220555 (DNAlig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
HVO_A0114
Motif
Other DBs
NCBI-GeneID:
124220555
NCBI-ProteinID:
XP_046485598
LinkDB
All DBs
Position
5:986824..992000
Genome browser
AA seq
916 aa
AA seq
DB search
MLKFNVIFTLFKSRTIILEQPVISLTRLLDSNGVSCSSFNWLHIGNSLSKKKDDDDSPSV
AKRKRVDSSNGTESISPPPAKKISTSVNDAPSTSSSQKSPGSIQRRQIGKENENKSVVKD
EDVKKTTPKRTTTKNDNRNSKNKINQSAKKRARIIPQDDSSDDDVHLALPDSPIKPDAKA
FLKSPVKKEMESEDDISPKSKHASEEEEAESPKKAKVEKPKASPATKKSPKNVHSFFAVK
QKNGSKPEEKKTSNGSAKTQTYSYNPGASKYHPIDDASWKQNEKVPYIALARTLEIIEST
SARLKMIEFLSNYLRSVIVLSPDDFLASVYLCLNQLGPAYEGMELGIAETTLMRAIAQCT
GRTVAQIKSDVQEVGDLGIVAEESRSNQRMMFQPAPLTVSGVFNKLKEISQMTGQASMTK
KVDKIQSLFVACRFSEARYFIRSLSGKLRIGLAEQSILQAIALACATTPPGQDYPPKILD
ASEKRSAESFKQDYDKKALILKTTYCECPNYDLIIPVILKEGINALPERCKLTPGIPLKP
MLAHPTKGVQEVLTRFDGLKFTCEWKYDGERAQIHIAENNHVSIYSRNQENNTSKYPDII
GRLGNTRGENVKSCVLDCEAVAWDRENEQILPFQVLITRKRKDASEANIKVQVCVFMFDL
LYLNGTSLVKEPFIKRRELLKENFKEVKGEWQFATSLDTTTMEEVQGFLDESVKGNCEGL
MVKTLEQDATYEIAKRSRNWLKLKKDYLDGVGDTLDVVVIGGYIGKGKRTGTYGGFLLAC
YDQENEEYQSICKIGTGFSDEDLQTHTEFLKKHVISQPKSYYRYDVSHEPDHWFEPVQVW
EIKCADLSLSPVHRAAAGIIDPEKGISLRFPRFIGIRNDKNCEDATSSQQVADLYNNQEH
IKNQTSTTKVAEEDFY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagtttaacgtgattttcacgctgtttaaatctcgtaccattatcctcgagcaa
ccggttatctcgttaacacgactgctagatagtaacggtgtatcgtgttcttcattcaat
tggttacatatcggtaatagtttgtccaagaagaaagatgacgacgacagtccttcagtt
gctaaaaggaaacgagtggacagttctaatggcactgaatctataagcccgccacctgcg
aaaaaaatcagtactagtgtcaacgatgcaccatctacctcatcgtcacaaaaatctcct
ggatcaattcagcgtagacaaataggaaaagaaaatgagaacaaatctgttgtcaaagat
gaggatgtcaagaaaactacacccaagagaaccacgacaaaaaatgataatcgtaattct
aaaaacaaaattaatcagagcgccaaaaaacgagcgagaatcatccctcaggatgattct
agtgacgacgacgttcacttggcactcccagatagtccaattaaaccagatgctaaagca
tttctgaaaagtcctgttaaaaaagagatggaatcagaggatgatatatctccaaaaagt
aagcacgcctcggaagaggaagaagcagaaagtcctaagaaagcaaaagtggaaaagcca
aaagcctcgccagcgactaaaaagtctccgaaaaatgttcatagtttctttgcagtaaaa
cagaagaacggttcaaaacctgaagagaagaaaactagtaatggtagcgctaaaacacag
acttattcgtataacccaggtgcgtcaaaatatcacccgatcgacgacgctagttggaaa
cagaatgaaaaagtaccgtacatcgcattggctcgcactttggaaattattgaaagcact
agtgcgaggctgaaaatgattgaatttctctcaaattatttgcgatccgtcattgttctc
agccctgatgatttcctagccagtgtttatctttgtttgaatcaactgggcccagcctac
gaaggcatggagttgggaatagccgagaccacacttatgagagcaattgcacagtgtacc
ggcagaactgttgcacagattaaatctgacgtccaagaagtcggagacttgggaatagta
gctgaagaaagtcgctctaatcagcgaatgatgtttcagccggcacctctgactgtttct
ggtgtgtttaataaattgaaagaaatctcacagatgacaggacaagcctccatgaccaaa
aaggttgacaagattcaatctctgtttgtcgcatgtcgtttttctgaggcaagatacttt
atacgttctttatctggaaaattgagaataggtctggctgagcagtctatcttgcaggca
atagctttggcctgtgccacaactccacctggtcaggattatcctccaaagattttggat
gctagtgaaaaaagatctgccgagtcattcaaacaggattacgataaaaaagccctgata
cttaaaactacgtactgtgaatgtccgaattacgatctcataattcctgttatactgaag
gaaggcataaatgccttaccagagcgatgtaaattaactcctggcattccacttaagcct
atgctggcacatccaacgaaaggtgttcaagaagtcttgacaagattcgacggactgaaa
tttacttgtgaatggaaatatgatggcgaaagagcgcagattcatattgctgagaacaat
cacgtgtcaatttacagcagaaatcaagaaaataataccagtaaatatccggacattatt
ggaagattgggcaatacacgtggggaaaacgttaaaagttgtgtattggattgcgaagct
gttgcttgggacagagaaaatgagcagattctgccattccaagtgttaatcacgaggaaa
cggaaggatgcaagtgaggcgaatatcaaagtacaggtttgtgttttcatgtttgatctg
ctctatttgaacggcacatcactggtgaaggaacccttcataaaacgtagagaattgctg
aaagaaaatttcaaggaagttaagggggaatggcaattcgcaacaagtcttgatacaacg
actatggaagaggtccaaggctttctagatgaatctgtaaaaggaaactgcgagggtttg
atggtaaaaacattggagcaagatgcaacgtatgagatagctaaaagatctcgcaactgg
ttgaagttgaaaaaggattatctagatggggtgggagatacgctggacgtagtagtgatc
ggaggttacattggaaagggaaagaggactggtacttatggggggtttttattggcttgt
tatgaccaagagaatgaagagtatcaaagtatctgtaagattggcactgggttcagtgat
gaagatcttcaaacgcatacagaattcttaaagaagcatgtaatctcgcagcctaaatct
tactaccgatatgacgttagccatgaacctgaccactggttcgaacctgtccaagtttgg
gaaataaaatgtgccgatctctccctctcacctgtacacagagctgccgctggcattatt
gatccagagaagggtatatctctgcggtttccgcgatttataggtatacgtaatgacaaa
aattgcgaggatgcaacatcatctcaacaagttgctgatttgtacaataaccaggaacat
attaaaaatcaaacgagtacgacaaaggttgctgaagaagatttttactag
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