Neodiprion pinetum (white pine sawfly): 124220660
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Entry
124220660 CDS
T08966
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
npt03009
]
124220660
03012 Translation factors [BR:
npt03012
]
124220660
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124220660
5.6.2.5 RNA 5'-3' helicase
124220660
Ribosome biogenesis [BR:
npt03009
]
Eukaryotic type
Other ribosome biogenesis factors
124220660
Translation factors [BR:
npt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124220660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
SMUBP-2_HCS1_1B
zf-AN1
ResIII
Viral_helicase1
DEAD
PIF1
AAA_22
Helicase_RecD
SLFN-g3_helicase
Flavi_DEAD
UvrD_C_2
T2SSE
nSTAND3
AAA_18
AAA_25
YqeC
AAA_31
AAA_6
DUF4537
Transp_Tc5_C
cobW
TrwB_AAD_bind
Piezo_TM25-28
ABC_tran
AAA
IBR
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
124220660
NCBI-ProteinID:
XP_046485835
LinkDB
All DBs
Position
5:31148524..31153808
Genome browser
AA seq
922 aa
AA seq
DB search
MDYVISSFVRKHIDLLRSERDENLQHVFNNISAQALRNLEKEGDALTKLSVGSLASRGLK
QLQIDFVDPNNLPLKHAFAVGDLVACIQSNNRSQFLPGLVSAISQRTISVTISDQTVVNV
NEEEQFAIIKADSDYTYNCQTRALKNLESTEIYSWRCFNVIRILFDNDEKIVQELIDMDN
EISEKYLNEDGQLKFINDKLAEDQRMAVSFALRKKFLAIIQGPPGTGKTTTLVELIGQLR
GLGKKVLVCAPTNVAVDNIAQKLCDAGIKPLRMGHPARIAKEVQSCSIDANVRQDNSYEI
LVQIKQSLKELQEKDGDTEKGGKPWGKIKELSKEYRERMDKLTSEIIRRHPVILCTLNSA
TTGKRAKTMRHVPREYFDVVVVDEASQALEASNWIAIPNAEKVVLAGDINQLPPAVMNQK
AAKNGLCVSLMERAIKKLGKKAYKSLEIQYRMNSKIMSWSSKQFYENTLKADKLVANHLL
RDLPGVESCSLTSDSVVFIDTCGCECEEYQIGSGTISKGNVGEAIVVDRLVAALVKSGVP
EREIGVITPYALQVDFVRKTLSTRSISAEVSTVDGFQGREKEVIVLSLVRSNEEKSLGFV
TDFRRLNVAVTRARRLLVVIVNSETVEDNKLITGLLKHIEDNGLLQTAQEYLEDNSEDLK
KDLEENVKVKQKSVVTNKTDSKTEKRKKPASKNGDKIKGDTNLKSVLKDKGIDLSINANR
KDYNLFECISESNSDIEDTELLPNTAEIATEDPEETDEALPSVEQVESKPKIELSNLIAS
LKQLETTSTQGTPLASNQPVPMQAKKNKKSKNRKPKNSEITADDDLEKLIATVTANDYIC
AMAGCKKSTQLMHVDCEFCKSRFCFTHGMQEIHGCGEAVRNKERKEFVRRKPENCKKTDK
DKFARKLKQLEEARKPKKKVEK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggactatgtaatatcgagtttcgtcaggaaacatatagatttattgcgatcggaacgc
gacgagaatctccagcacgttttcaataacatatctgctcaagcccttcgtaacctcgaa
aaggaaggagatgcattgactaaattatccgttgggagtttggctagccgtggtttgaaa
cagctccaaattgacttcgtcgacccgaacaatctccccctgaagcatgcctttgccgtc
ggtgacttggtcgcctgcattcaatcgaataatcgcagccagtttctacctggtctcgtt
tcagccatctcacagagaaccatttcagtcaccatttcagatcaaactgttgtcaatgtc
aatgaggaggaacaattcgccatcatcaaagctgattccgattacacttacaattgccaa
accagagctttgaaaaatctggaatcaacggagatatattcctggcgatgtttcaatgtc
attagaattcttttcgacaatgatgagaagattgttcaggagctaatagatatggacaat
gaaatctctgaaaaatatttgaatgaggatggtcagctgaagtttatcaatgataaactt
gcagaggatcagcgcatggcagtatcatttgctttgcgtaaaaaatttcttgccattatt
caaggaccccctggcacaggaaagactaccactttagttgaattaatcggccaattgcgg
gggttgggtaaaaaggtattggtgtgcgctccaactaatgttgcggtggacaacattgcc
cagaaattatgtgatgctggcataaagccattgagaatgggccatccagctaggatagcc
aaggaggtacagagttgttcaatagatgccaacgtgcggcaagataactcctatgaaatt
ttagttcagataaaacagtcgttaaaagaattgcaagaaaaggacggagacactgagaag
ggtgggaagccatggggtaaaatcaaggaactgagcaaagagtaccgtgaacgaatggac
aagctaacttctgagataatcagacggcatcctgtcattctctgcactctgaactctgca
actactggaaaacgtgctaaaactatgcggcacgtgcccagagaatatttcgatgttgtt
gtagtggacgaagcttctcaggcattggaggcctcgaattggattgcgattccaaatgcg
gagaaggttgtgcttgccggcgacattaaccagcttccgcctgctgttatgaaccaaaaa
gcagccaaaaacggactatgtgtgagcctcatggaaagggcgattaaaaaacttggaaag
aaggcttataagagtctcgaaattcagtacagaatgaatagcaaaatcatgtcgtggtct
agcaaacagttttatgaaaatactctcaaggcggacaaactcgttgcgaatcacttactc
agagatttgcctggagtggaatcatgttcgcttacaagtgattcggtagtgtttatcgac
acctgtggatgtgaatgcgaggagtatcaaatcggcagtgggacaatatcgaaaggaaac
gttggtgaagcgatcgtagttgaccgactagtagcggcactggtaaaatctggtgtcccg
gaacgagaaattggtgtaataacgccgtatgctctgcaggtagactttgtacgaaaaacg
ctttcaactcgttctatatctgctgaagtttctacggttgatggctttcaaggtagagaa
aaggaagtgatcgtactatctttggtccggagtaatgaagaaaaatcactcggctttgtc
actgactttagacgtctaaacgtcgcggttacacgggcaagaagactgcttgtcgtcatc
gtgaacagcgaaactgttgaggataacaaattaattactggccttttgaagcatattgaa
gataacggtctgttacaaacagcgcaggagtatttggaagataattcggaggacctcaag
aaagacttggaagaaaatgtaaaagtgaaacagaaatctgtggtgaccaataagacggat
agtaagacagaaaagagaaagaaaccagcatcgaaaaatggcgataaaattaaaggtgat
accaatttgaagagtgttctcaaagacaaaggaatcgatttgagtataaacgcaaatagg
aaagattataatctcttcgaatgtattagcgaaagtaattccgacattgaggacacagaa
ttacttccgaacacggcagaaatcgctacagaggacccagaagaaacggatgaagctttg
ccatccgttgaacaggtggaatcaaaacctaaaattgaattatccaatttgatcgcgagt
ttaaagcagctcgaaacaacttccacgcaaggtacgcctcttgcttcaaaccaacccgtg
cctatgcaagctaagaagaataaaaaatctaaaaatcgtaagccgaaaaattcggaaata
acggcggacgatgatcttgagaaattaatagcgacggtgacagccaatgactacatttgc
gcaatggcagggtgcaagaaatcgacccaattaatgcatgttgattgcgaattctgtaaa
tctaggttctgctttacacacgggatgcaagaaattcacggttgtggagaagctgtgaga
aacaaagagaggaaagagtttgttcgtcggaagccagaaaactgtaagaaaacggacaaa
gataaatttgcaagaaagttgaagcagctggaggaggctcgaaaaccgaaaaagaaggtt
gaaaagtag
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