Neodiprion pinetum (white pine sawfly): 124220675
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Entry
124220675 CDS
T08966
Symbol
Hcf
Name
(RefSeq) host cell factor 1 isoform X1
KO
K14966
host cell factor 1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03083
Polycomb repressive complex
npt04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124220675 (Hcf)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
124220675 (Hcf)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
npt01009
]
124220675 (Hcf)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npt03036
]
124220675 (Hcf)
03029 Mitochondrial biogenesis [BR:
npt03029
]
124220675 (Hcf)
Protein phosphatases and associated proteins [BR:
npt01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124220675 (Hcf)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
124220675 (Hcf)
HMT complexes
COMPASS/SET1 complex
124220675 (Hcf)
MLL-HCF complex
124220675 (Hcf)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
124220675 (Hcf)
Mitochondrial biogenesis [BR:
npt03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
124220675 (Hcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
124220675
NCBI-ProteinID:
XP_046485878
LinkDB
All DBs
Position
5:35338659..35347834
Genome browser
AA seq
1575 aa
AA seq
DB search
MAAPMLKWKRITNPTGPQPRPRHGHRAVALKDLMVVFGGGNEGIVDELHVFNTATNQWFV
PSTKGDIPPGCAAYGFVVDGTRILVFGGMVEYGKYSNELYELQASRWEWKRLKPKPPKQE
QPPCPRLGHSFTLIGNRIFLFGGLANDSDDPKNNIPRYLNDLYTLELLGNGVTAWDVPQT
HGNSPPPRESHTGVAYADRTTGKSCLVIYGGMSGCRLGDLWFLDIDTMTWNKPLVHGPTP
LPRSLHTATLIGHRMYVFGGWVPLVVDDVKVATHEKEWKCTSTLACLNLETLTWEQLTVD
SLEENVPRARAGHCAVAVHSRLYVWSGRDGYRKAWNNQVRVCCKDLWYLEVKKPPSPSRV
QLVRASTQSLEVSWAATPSAQYYILQIQKYDMPPTTGTFPAAAAPVSAPTAAPVPVAAAV
PAPATVSSPQIPPVVTPVPSTPPIVRQQAPSQTPVRIQTAVQQSPGQKTIQTPVMAKQGS
PMTPRVTGNLIRIRSPLVTTVTPTTDQGASPGTTSASQSPTTAMSGIQALAAAAAATQKI
SMNNVQILPQPGNTIRMKNMQPGQQIRFAAPGATVLRTASPQQSKQIILQKPGQNITGQP
QIVHLLKAGQGMVAAVPKVSLIQGKTVQTAGSKPLNQGPTILRLVNPNTVAGSKVLTTVK
TSNLVAMSKGQSISGKQTIMITKPGGNGGLVGRTNQIIVVTTGSGLRAVQAVTTSQAGSG
QPGNLSTPVNVLPLSATNHVTNQQGVKMIVVSSGAMGGGTAGKPITITVPGQGGVPKTVT
IATKGNQQTLFNPTKNQIVAVPQMQKTPEAVTVSGKPVTLQMSSGIGTKTVTLMPSSSSI
VTTAGTSEIIDTSKMIFVPSQKQPSASLASTSDGPATTDAALAALAAEAGLIDPVQESSG
GLSFMVSADETGAVDGKGDSCNGNEAAVLASQLGSGEPLQVDNDGNFIIPQVDGPADDLM
EDGEGGGEKEETAATENEPETNEPTEPHPENDSNEAEQHTDSVTADVKLRLQEAVPEDSS
KDPQLDTETSKTPPTSAEPLSTELDATTNSENPEAEIKLEGTEESEENSEQQEQLPNESA
ETEANLPAEDINMKTEDVSLPLDEKILESEGEADNSQDEQNSGKDISNEQHQLEAISMSV
DQSDSDNVSQADSQPAVDDATSQDSQTSQDDIDRKKVDDEPESESLRLNLENPLSPENIK
AKDEPMETESEFLMASKTPIPSPTTAAPTILPKSEPQESQDEPMNEDEDDAVSEPSPIAT
KPSTATNVTTNGIAPTVKRPVPVAILKNEPKDEKDATPTSGDSTALTTLATAALGSAGQA
VKVKAEMLRFQTEEEKKDADWYDVGVIKGTTFTVQHYYLPGDEPLNTSQPLPADVFKGRT
KIFLEPGTAYKFRVAAVNSCGQSGWSEVSAFKTCLPGFPGAPSAIKISKSAEGAQLSWEP
PPSNLGPILEYSVYLAVRSASAVSNSAGEATTVATTPTQLAFIRVYCGPTNACSVPNSSL
SAAHVDTTTKPAIIFRIAARNDKGYGPATQVRWLQDPTTAVKSNPQLKRPVADARPQVNS
PQKKFKTDTGTENFS
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacccatgttaaagtggaaacgaatcacaaatccgaccgggcctcagccaaga
ccgagacatgggcatcgggcggtcgctcttaaagacctcatggtcgtcttcggcggtggt
aacgagggaattgttgacgaactccacgtattcaatacagcaacaaaccaatggtttgtt
ccatcgacgaagggagatatacctcccggttgtgctgcctatgggttcgtggtggatggg
acccgaattttggtattcggtggtatggtagaatatggaaagtattccaacgaattatat
gagctccaggctagtagatgggagtggaagcgattgaaaccaaaaccacccaaacaggaa
caaccaccgtgcccgcgactgggtcacagcttcacactgatcggcaacagaatattctta
tttggaggattggcaaacgacagtgatgatcctaagaataatattccaagatatttgaat
gatctgtatactctggagttacttggcaatggtgtaacagcatgggatgtaccacaaact
catggaaactcaccgccgccaagagaatcgcacactggtgtagcttacgcagatcgcaca
actgggaaatcatgtctagttatatatgggggaatgagcgggtgcagactgggggatctg
tggtttttggacatagacacaatgacttggaacaagccattagtccacgggccgacgcca
ctacctcgctctctgcatactgctactttgatcgggcatcgaatgtatgtctttggtggt
tgggtaccactggtcgttgacgacgtcaaggtagcaacccacgagaaggaatggaaatgc
acaagcacattggcatgcctaaatttagaaacattaacgtgggaacaattgaccgtcgat
tcactggaagaaaatgtgccgagagccagagcaggccattgtgctgtcgcagtccatagt
cgtctatacgtttggtcgggtagagacggatatcgcaaagcttggaacaaccaggttagg
gtatgctgtaaagatttgtggtacttggaagttaagaaaccaccatctccgtccagagtg
caattggttcgagcttcgactcagtccctagaagttagttgggccgccacaccttctgct
caatactacatcttgcaaatacagaaatatgatatgccaccaacaacgggtactttccca
gcagctgcagctcctgttagcgcgcctacagctgctcctgttccggttgcggcagccgtt
ccggcgcctgctactgtatcatctccacagataccaccagtggtcacgccagttccttcc
accccaccaatcgtccggcagcaagcaccatcccagacacctgtacgaattcaaacggct
gtgcaacaaagtccggggcaaaagacaatccaaactccagttatggcaaaacaaggaagt
ccaatgactccaagagtcactgggaatcttatccgcattcgttcaccgcttgttacaact
gtaactcccacaacggatcagggagcctcacctggcacaacttctgccagtcaatctccg
accaccgcaatgtccggcatacaagctttagctgctgcagctgccgcaacgcaaaagatc
agcatgaacaatgtgcaaatacttccacaacctggcaacaccattagaatgaaaaacatg
cagcctggtcagcaaatacgatttgctgcaccaggagcaacggtattaaggactgcctca
ccacagcagagcaaacagataatcctccaaaaaccaggacaaaacataactgggcagcca
caaattgttcacctcctcaaagccggacagggaatggtcgcggcagtaccaaaagttagt
ttaattcaaggaaaaaccgtgcaaacggcaggatcaaagcctcttaatcagggaccaaca
attcttagattggttaatcccaacactgtggctggctcaaaggttcttacgacagtaaaa
acttcgaatttagttgcaatgagcaaaggacaaagtatttccggaaaacagactatcatg
attactaaacctggcgggaatggcgggctggttggcagaaccaaccagattattgtcgtc
accactggctcaggtctgagagctgttcaggctgttacaacctctcaggccggctctggc
caacctggaaacctaagcacaccagttaacgtacttcctttatcagcgacaaatcatgta
accaatcagcaaggtgttaaaatgattgttgtatcatctggtgccatgggtggtgggact
gctgggaagcctatcaccataacggtacctggccaagggggagtaccaaagactgttaca
attgctacaaaaggaaatcaacagacactcttcaatccaacgaaaaatcaaattgtcgca
gttccacaaatgcaaaaaacaccagaggctgttaccgtttctggtaaacctgtaacgttg
caaatgtccagcggcattggtaccaaaactgtcactctgatgcctagcagcagctcgatt
gtgaccactgctggaacatcagaaatcatcgatacgagcaaaatgatttttgtaccctca
caaaaacaaccatcagcctcgctggcttcaacatctgatggtccagcaacgactgatgct
gcgctagcagctctagccgcagaggctggattgattgatcctgttcaagaatcctctgga
ggtttatcgttcatggtatctgcagatgagactggagcggtagatggcaagggggacagt
tgtaacgggaatgaagcagctgttttagcgtcacaacttgggtctggggagccactacaa
gttgacaacgatgggaactttattatcccccaagttgatggtcctgctgatgatttaatg
gaagatggagaggggggaggagaaaaagaagaaacagcagcaacagaaaatgaacctgaa
acgaatgagcccaccgaaccacaccccgaaaatgattccaatgaagctgaacagcatacg
gattctgttacagccgacgtaaagctacggcttcaagaagctgtacctgaagatagtagt
aaggatccacaactggacactgaaacttcaaagactccaccaacttctgcagaacctctt
tcaacagaactggatgcaacaacgaattcagaaaatccggaagctgagataaaacttgag
ggaactgaggagtctgaggagaatagtgaacaacaggaacagttaccaaacgaaagtgca
gaaactgaggctaacctaccagctgaggatataaatatgaaaacagaagacgtaagcctg
cctttagatgaaaaaattcttgaatcagaaggggaagcagacaattctcaagacgaacaa
aattctggaaaagacattagcaatgaacaacatcagcttgaagctatcagtatgtcggta
gatcagtcggattcagacaatgtttcgcaagcagattcacagcctgctgtagatgacgca
acatctcaggattcgcagacatcccaggatgacattgatcggaaaaaagtggatgacgaa
cctgaaagtgaatcacttagattaaatttggagaatcctttatcaccagaaaatatcaag
gccaaggatgagccaatggaaactgaatcggaatttttaatggcatccaagactcctatt
ccttccccgacgaccgccgctcctacaattttaccaaaatcagagccacaagagtcacag
gacgaaccaatgaatgaagacgaagatgatgcagtgtctgagccttcgccaattgctaca
aaaccatctaccgccacaaatgttacaacaaatggcattgccccaactgttaagaggcca
gtaccagtggcaattttgaaaaatgaacccaaagatgaaaaggatgctacacctacaagt
ggtgactcgactgctcttactactttggctactgcagcgttaggctctgctggacaagca
gtcaaagtcaaagctgaaatgttacgtttccagactgaagaagaaaagaaggatgccgac
tggtacgatgtcggagtgataaagggaacaacttttacagtccagcattactatttgcct
ggggatgagcccctaaatacatcccaacccctgccagcggatgtatttaaaggacgtacg
aaaatcttccttgaacctggcaccgcatacaagtttagagttgctgctgtgaatagctgt
ggtcaaagtggttggagtgaggtgtccgcattcaagacttgtctgcctggttttccgggt
gcgcctagcgccataaaaatatcaaagtctgcggaaggagctcagctatcttgggaacca
ccgccaagtaacttgggtccgatactcgagtactcagtttacttggcagtgagaagtgcc
agtgctgtttcaaacagcgctggagaagccaccactgttgctacaacgcctacacagctt
gcgttcatcagagtctattgcggccctactaatgcctgttccgtacctaacagttcgctg
agtgctgctcacgtcgatacgacgactaaaccagcgattatatttagaatagctgcgcgc
aatgataaggggtatggaccagcgacgcaagtcaggtggctgcaagatccaaccactgca
gttaagagtaatcctcaacttaaaaggccagtcgcagacgcacgtcctcaagttaattct
cctcagaagaaattcaagacagataccggaaccgaaaatttctcgtga
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