Neodiprion pinetum (white pine sawfly): 124220854
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Entry
124220854 CDS
T08966
Symbol
Tfb1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03022
Basal transcription factors
npt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124220854 (Tfb1)
09124 Replication and repair
03420 Nucleotide excision repair
124220854 (Tfb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124220854 (Tfb1)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124220854 (Tfb1)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124220854 (Tfb1)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124220854 (Tfb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
124220854
NCBI-ProteinID:
XP_046486151
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All DBs
Position
6:9404679..9410416
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AA seq
561 aa
AA seq
DB search
MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
AKIQLQVVLHDGSSSTFHFVNRNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRM
LQENPTLLQLYRDLVITQVISSEEFWAQHAAEYTQAKKGQRQDIGVNGAFLADIKPQTDG
CNGLKYNLTVDIIECIFKTYPAVKKKHVENVPQKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQSGISDPLVDISSFEDKSIDENYGTGSGKADKASGNIVHQSM
IKRFNQHSIMVLKASTANTSQDTSQLHLNGTTTLSTTKSEATNQIEDRAKAKKRRIQEKL
VYDDLDTSCDLNAKTTAPLNLSHIDRYLHGPVPGSGSAEATNEELQVTLTQLRREASNWV
NGNHVPRHATTSLVSPAAAVSALGELTPGGALMKGFREDSLGQLIPKDLEKELRNMYMCT
CELLRHFWKSFPPNTPQLEEKAVRMHEALHRFHSARLKPFEDRVQREFSAVSQHLTSHLN
QLLNTAYRKFGVWQQRKLQMR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgactacttcttccgaagatgttttgatgcaagtgggccaagttcgttataaaaagggc
gatggcactttgtatgtaatgaatgagaggatagcatggatgttggataacagggacact
gtttccgttagtcacaaatatgctgatattaaactacaaaaaatatcgccggagggtaaa
gcaaaaattcaactacaagttgtactccacgatggatcctcgtctacatttcactttgta
aatagaaatgggcaggaggcgcagatcaaggatcgggatgatgtcaaagaattgttacaa
caacttttacccaagtttaaaagaaaggtcaacaaggaattagaagaaaaaaatagaatg
ttgcaagaaaatccaaccttgctacagctctatcgtgatctcgtaatcacacaagttatt
tcctctgaggaattctgggctcaacacgcagctgagtacactcaagcaaagaaaggtcag
cgacaggatattggagtcaatggtgcttttttggctgacatcaagccgcaaacagacgga
tgtaatggtttgaaatacaatttaacggtagacataatcgaatgtatatttaaaacatat
cctgcggtgaaaaaaaagcatgtagaaaatgtcccgcaaaaaatgtcggagtctgatttt
tggacaaagttctttcaatcgcattatttccatcgagatcgtataaacgcagggaccaaa
gatcttttcaccgaatgtgccaaaatagatgatcaagagttgaaaaaagacattcaatcg
gggatcagtgacccattggttgatatttcttcatttgaagacaaatctattgatgaaaat
tacggcactgggtcaggaaaagctgataaagcctctggcaacattgtacaccaaagcatg
atcaaaaggtttaatcagcatagtataatggtgctgaaagcaagcaccgcgaatacttcg
caagatacgagtcaacttcatttaaatggaacaacaactttgtcaacaactaaatcggaa
gctaccaaccagatcgaagatcgtgccaaagccaaaaaacgtaggatacaagagaaatta
gtatacgatgatcttgataccagctgtgatctaaacgcaaagaccacagctcccctcaac
ctgtctcacattgacagatatttacatggaccagtaccgggtagcggaagtgcagaagcc
accaacgaagagcttcaagtcaccttaacgcaactcagaagagaagcgagcaattgggtg
aatgggaaccatgtaccgagacatgcaacaacctctttagttagtccagcagctgcagta
tctgctttgggagaacttacgcctggtggtgctcttatgaaaggttttcgagaggatagt
ttaggacaattaattccgaaagatttggaaaaagaattacgtaatatgtacatgtgtacg
tgtgaattattaaggcatttttggaagagttttccaccgaacactccccagctcgaggag
aaggctgttcgtatgcatgaggctcttcacagatttcattctgcgaggctgaagccattt
gaggatcgtgttcagagggagttttcggcagtcagtcaacacttgactagtcacctgaac
cagctcttgaacactgcctatagaaaattcggagtttggcaacaaagaaaattacaaatg
aggtag
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