Neodiprion pinetum (white pine sawfly): 124220908
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Entry
124220908 CDS
T08966
Name
(RefSeq) high mobility group protein DSP1 isoform X1
KO
K10802
high mobility group protein B1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03410
Base excision repair
npt04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124220908
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124220908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npt03036
]
124220908
03400 DNA repair and recombination proteins [BR:
npt03400
]
124220908
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npt04147
]
124220908
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
124220908
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
124220908
MMR (mismatch excision repair)
Other MMR factors
124220908
Exosome [BR:
npt04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
124220908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
MRC1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
124220908
NCBI-ProteinID:
XP_046486299
LinkDB
All DBs
Position
6:3635328..3645248
Genome browser
AA seq
433 aa
AA seq
DB search
MSEHHRVGGGWGTASPGTREDGSGGAVWWPGGLNAVSAEQQQQTMQQHHQHLINQQQQQQ
QQQQQQQQQQQQQQQQQQQQQLSQHHQDIVRSTAAVAATQQLFSYKMASSFQNPATTGTQ
STVSTSAPVGSCMRGGYDYRLGGAGGGAGGPGAPPSVQWWYPGSVMEASQNNLHQQQLQQ
QQQQQHLSPITTQASTPPIMSPHQIQQLPQQQNNLQNHAQGLQRGKMPRGKAADAKPRGR
MTAYAFFVQTCRQEHKKKHPEENIVFQEFSKKCALRWKTMSDKEKKRFHEMAEKDKKRYD
AEMQNYTPPKGENKTGRGKKRKHIKDPNAPKRSLSAFFWFCNDERGKVKSLNPEYGVGDI
AKELGKKWSDAEPETKSKYEAMAEKDKARYEREMTAYKKKLKTGGPGVGAPAIAVKHDSE
EDAEEEDGEEDDE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacaccaccgcgtcggcggtggatggggcacggcgtccccgggtacgcgagag
gatggatccggtggagcggtatggtggccaggcggtcttaacgccgtatcggccgaacaa
cagcagcaaaccatgcagcaacaccatcagcacttgatcaaccagcagcagcaacagcag
cagcagcaacagcagcagcagcagcagcagcaacagcagcaacaacaacagcagcaacaa
cagttatcccagcatcatcaggacatcgttagaagtacggcggcggttgccgccactcag
caacttttctcctacaagatggcctccagcttccaaaatccggcaactaccggcactcag
tcgaccgtttcgacgtcggcgcctgtcggatcctgcatgcgggggggttacgattacagg
cttgggggtgctggtggaggtgccggcggacccggggcaccccccagtgttcagtggtgg
tatcccggcagcgttatggaggcatcgcaaaataatcttcatcaacaacagcttcaacag
cagcagcaacagcaacacctatcgcctattactacgcaagcttccacgccccccattatg
tccccgcatcagatacagcagctaccacaacagcaaaataatctgcaaaatcacgcgcag
ggcttacagcgaggaaaaatgccgagaggaaaggcagccgatgctaagccgagggggcga
atgactgcgtacgcgttcttcgtacagacttgtcgccaggagcacaagaagaaacatccc
gaagagaacatcgtattccaggagttttccaaaaagtgtgctctcaggtggaagactatg
tcggataaggagaagaaacgcttccacgaaatggctgagaaagataagaagaggtatgat
gctgagatgcagaattacactccacccaagggtgagaataaaacaggcagaggcaagaaa
cgcaagcacatcaaagatccaaatgcacccaagagatcattgtcggcctttttctggttc
tgcaatgacgagcgtggtaaggtcaagtcattgaatccggaatatggagttggagatatt
gccaaggagctaggaaagaagtggtctgatgcagagcctgaaacgaaatccaagtacgaa
gccatggcagagaaggataaggctcgatatgaaagggaaatgactgcgtacaaaaagaaa
ctgaagaccgggggacctggcgtcggagccccggcaatcgctgtgaaacacgacagcgag
gaggatgcggaggaggaagatggtgaagaggatgacgaataa
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