Neodiprion pinetum (white pine sawfly): 124221233
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Entry
124221233 CDS
T08966
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X2
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124221233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124221233
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124221233
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
124221233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF4600
Motif
Other DBs
NCBI-GeneID:
124221233
NCBI-ProteinID:
XP_046486975
LinkDB
All DBs
Position
1:complement(9337144..9343881)
Genome browser
AA seq
1213 aa
AA seq
DB search
MVKELYRETAVARKISHVTFGIDNRHNMERQAHIHVVSKNLYSQDSHRSPVPYGVLDRKM
GTCSNQDSCTTCGKTLNECIGHFGYIDLELPVFHVGYFRSVINILQTICKKCSHVMLKET
EKKSYMVRVLNPNIGYLTRKALRKQILEKAKKNSTCPNCGDLNGTIKKAGLLKIVHEKYK
NKKTIDMAVKRRLAEYNNVLEENRELEGILQSGLLHVLNPIEVQGILERIPVSDVPLLLM
NPDCSLPKDLILTRIPVPPICIRPSVVSDVKAGTNEDNLTMKLSEIVFINDVIQKHRQSG
AKVQMYNEDWEFLQLHCALYVNSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKR
VDFSSRTVISPDPNLRIEQVGVPIYVAKILTYPERVNASNIELMRKLVQNGPDVHPGANF
VQQRSTEFKKFLRYGNRLKISQELKYGDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKV
LEHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIA
ATQDFITGGYLLTQKDTFLNKSQACQLASCLLAGDDASMNIDLPEPAIMKPVELWTGKQI
FSLILKPNKKCPIRANLKTKGRAYTSNEELCINDSFVIIRNSELLAGSMDKSTLGSGSKQ
NIFYVLLRDWGEDASTTAMWRLARVASYYLMNRGFSIGISDVTPGQGLLKAKHDLLTAGY
SKCTEYITQMESGRLICQPGCSEEESLEAMILKELSVIRDHAGKACLKELHPSNSPLVMA
LSGSKGSFINISQMIACVGQQAISGKRVPNGFEDRALPHFGRHSKVPAAKGFVENSFYSG
LTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQIL
YGGDGLDPTYMEGKDCPVDYKRVLDHTRAKSPYRDEQPLDGTSVISATTELLKSEDYSCL
SDEFKQELETFLKSVAHKINRLRHNATSKSSAVQQLERLTVSQLVEFMHTCKEKYMRAKI
EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINANSNISTPIITA
ALENDTDPEFARRVKGRIEKTTLGEVTEYIEEVYLPDDCFLLIKLDVDRIKLLKLEVDAN
SIRYSICTSKLRLNPKLVNVRGDSIITVNPNKQKLNINYALMQLKETVPNVVIKVNSSRI
IGSAVCCQSSNSQ
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggttaaggaattgtacagggaaactgcggtggcccgcaaaatttcccatgtcacgttt
gggattgacaaccgtcataacatggagcggcaagcccatatccatgtcgtctccaaaaat
ctctacagtcaggacagccatcgttcgccagtgccttatggtgttctcgatagaaaaatg
ggaacatgctccaatcaggacagctgtaccacatgtggtaaaacattgaacgaatgtatc
gggcactttggatacattgatttggaactgccagtatttcatgtgggatattttagatct
gtgataaacatccttcaaacaatatgcaagaaatgttcacacgtgatgctgaaagagaca
gagaaaaaaagttacatggtgcgtgtattgaatccaaatataggatacttgactcgtaaa
gcactgagaaaacaaatactggaaaaggcaaagaaaaattctacgtgtccaaattgtggg
gatttaaatggaacaattaaaaaagcagggttgttaaaaattgttcatgagaaatataag
aacaaaaaaacaattgatatggcggtgaaacgaagactggccgaatataacaatgtattg
gaagagaacagagaactagaagggattcttcaaagtggactgcttcatgtcttgaacccc
attgaggttcaaggtatcctggagcgtataccagtatcagatgtgcctcttctgctaatg
aatcctgactgttcgctaccaaaagatttaattttaacaagaattcccgtgcctccaatt
tgcattaggccgagcgttgtctccgacgtaaaggcaggcacaaatgaggataatttaaca
atgaaactgtcagaaattgtcttcattaatgacgttattcaaaaacatagacaaagcgga
gccaaggtgcagatgtataacgaagattgggaatttttgcagttgcattgcgctctttat
gtcaatagcgaaatgtccggtatcccactaaacatgcagccaaaaaagtctggtcgaggt
ttagttcagcgcctcaaaggaaaacaaggcagatttcgcggcaacttatctgggaaacgt
gttgatttttcgagcagaactgtgatttcgccagatcccaatttacgcattgaacaggta
ggagtaccgatttatgttgcgaaaatattgacatatccagaaagggtgaatgcttctaac
atagaattaatgcgtaaattagtgcaaaatggtcctgacgttcacccaggagctaatttt
gtacaacaaagaagtacagaatttaaaaaatttttgcgctatggaaatagattgaagatt
tcccaggaactaaagtatggagacatcgttgagagacatctccgagacgacgatgttgtc
ttattcaatcgacaaccttcactacataagctcagtataatggctcataaagccaaagta
ttagaacaccgaaccttcagatttaacgaatgtgtctgcacgccttacaatgccgacttt
gatggtgatgaaatgaacctacatttaccacaaactgaggaagctagagccgaggcacta
gtattaatggggaacaaatcaaatttagtaacaccgcgaaatggcgagctgctgattgct
gctactcaggattttataactggtggatatcttttaacgcaaaaggatacattcctcaat
aaatcgcaagcttgtcaattggcgagttgtcttctggcgggagatgatgcatcaatgaac
attgatctgccagaaccagctattatgaaaccagtagaactgtggacgggtaaacagatt
tttagtttgatactaaagccgaataaaaaatgtccaattagagccaacttgaaaaccaag
ggcagagcatacactagtaacgaagagctgtgcattaatgattcgtttgtaataatccgt
aattctgaactcctcgctggatctatggacaagtctacgctaggttccggatctaaacaa
aatattttttacgttttattgagagactggggagaagacgcttcaacgacagctatgtgg
cgtttagctcgagttgcaagctactatcttatgaacagaggtttttcaattggaatcagc
gacgtcacacctggacaaggcctgctcaaagctaaacacgatcttcttactgctgggtat
tcgaagtgtactgaatacataactcaaatggaatctggaaggttgatttgtcagccaggt
tgttctgaagaagaaagtctggaggcaatgattttgaaagaattatctgttattcgtgat
cacgcaggaaaagcctgtttgaaggaactgcatccaagtaacagtccgttggtcatggct
ctctctggtagcaagggcagctttattaacatttcacaaatgattgcttgcgtcggacaa
caagctatcagtgggaaacgtgtaccaaacgggtttgaggatcgtgctctgccgcacttt
gggcgtcattccaaagttcccgcagccaaaggctttgtagaaaactcattctattctggt
cttactccaactgaattctttttccacacaatgggaggcagagaaggtctcgtagacaca
gctgtaaaaactgcagagacaggatatatgcaaagaagattggtcaaaagtttggaggat
ctttgcctccactatgatatgacggtcagaaattctgtcggagatattgtgcaaattttg
tatggcggagatggtttagatccaacgtacatggagggaaaggactgtccagtcgattat
aaaagagtcttggatcacacacgagcaaagtctccctacagagatgagcaacctttggat
ggaacaagtgtaattagtgctacaactgagctgttgaaatctgaggactactcatgcctg
agcgacgagtttaagcaagaactagaaacattcctgaagtccgtcgcgcacaagataaat
aggctgcgacacaatgctacgtcaaaatcctcagctgttcaacaattggaacgtctcacg
gtatctcaattggtggaatttatgcatacgtgtaaggaaaaatacatgagagcaaagatt
gaaccaggcacagcggttggagctcttgctgcacaaagtattggtgaaccaggcactcaa
atgacattaaaaactttccactttgctggtgtcgcctccatgaatattacacagggtgtt
cctcgtataaaagaaatcattaatgctaatagtaatatcagtacacctatcattaccgcc
gctttggaaaatgatacagatccagaatttgcaagacgagttaaaggtagaatagaaaaa
acaacattaggtgaagttacggaatacatcgaagaagtatatctgccagatgactgtttt
cttttaattaagttagatgtcgacaggataaaacttctgaaattggaagttgatgcaaat
tctattcgttactcaatttgcacatcgaaacttcgtctaaatccaaaactcgtcaatgta
agaggggattcaattattacagtgaatcctaacaagcagaaacttaacataaactatgct
ctcatgcaactcaaagaaactgttccaaacgttgtcataaaggtgaattcttcccgtata
atagggtctgccgtctgttgccagagcagtaattcacaatga
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