Neodiprion pinetum (white pine sawfly): 124221265
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Entry
124221265 CDS
T08966
Symbol
Lcch3
Name
(RefSeq) ligand-gated chloride channel homolog 3 isoform X1
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt04080
Neuroactive ligand-receptor interaction
npt04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124221265 (Lcch3)
04082 Neuroactive ligand signaling
124221265 (Lcch3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
npt04040
]
124221265 (Lcch3)
Ion channels [BR:
npt04040
]
Ligand-gated channels
GABA-A
124221265 (Lcch3)
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GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
OAD_gamma
Motif
Other DBs
NCBI-GeneID:
124221265
NCBI-ProteinID:
XP_046487038
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Position
6:complement(3169573..3186980)
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AA seq
527 aa
AA seq
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MFERQPYSCGTRRTHSEHLRFILRLHLSDEMFTKHHALLIFLLLYLEHRRVWSTGESSET
TTDTRISDRLENVTQTISRILEGYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTI
TMYLNQYWKDERLAFSHEEEILTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLS
GDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWKETPVRGVEEA
ELPQFTIIGYETNDRKERLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFW
INHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAA
VNYTYWGARAKKKTKKKEGTEKKSVTTAKTGGEASSPFAESTDADIIELQDLRMSPLPSI
RSRSGIVAAPDGAGVPVRDHDPAKFPPSFRISRPPGYNTHCRTSGLRYRGARQHKPKVLH
ALRRGASVLRASMPKIKDVNIIDKYSRIVFPVSFLLFNAVYWIFYIL
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcgtcaaccatattcatgtgggacaagaagaactcacagcgaacaccttcgt
ttcatattgagattacatctgagtgacgagatgttcacgaagcatcacgctcttctaata
tttcttcttctgtatttggaacatcgcagagtttggagcactggggagagcagtgaaacc
accaccgacactaggatatcggatagattggaaaatgtaacccaaacaatttctaggatt
cttgagggatacgacattcggctgagaccaaactttggtggtgaaccactcttggtcgga
atggatttgacaatcgccagttttgacgccatatcagaggtcaacatggactataccata
accatgtatctgaatcagtactggaaagatgagaggttggcgttttcgcacgaagaagaa
attctgacgcttagtggggattttgccgaaaagatttgggtgcctgataccttttttgct
aacgataagaacagctttctacatgacgtgacggagcgaaacaagttggtgcgtctgtca
ggggatggatctgtcacttacgggatgaggtttacaacaaccttggcctgcatgatggat
cttcactattatccactggactctcaaaattgcactgtcgaaattgaaagctatgggtac
acggttctggacgttgtcatgtactggaaggagacaccggtccgtggtgttgaagaagcc
gagttgccacaatttacgattatcggctacgagacaaatgatcgtaaggaaagattggcg
actggcatctatcagcgactttctctcagcttcaagctgcaaagaaatatcggctacttt
gtctttcaaacctacctacccagcattctgatcgtaatgcttagctgggtcagcttctgg
ataaaccacgaggcaaccagcgcgagagtcgcactgggtattaccactgtgctgacgatg
actacgatatcaacgggcgtcaggagttccttgccaagaataagctacgtgaaggcgatt
gacatatatctcgtaatgtgtttcgtgtttgtattcgccgccctcctagagtatgcggct
gtaaactatacgtactggggtgccagggctaaaaagaagactaagaagaaggaaggaacg
gagaaaaaatcagttaccacggcaaaaactggtggcgaagcgagctcgccatttgccgaa
tcgacagatgcagatatcatagagctccaagatctgagaatgtcaccattgcccagcata
agaagcaggtcaggaatcgtggctgctccggatggtgcaggagtaccggttcgggatcac
gacccggccaaatttcctccaagcttccgaatttctcgacctccgggatacaacactcac
tgtagaacgagcggtttgcggtacaggggcgccaggcagcacaaacccaaagtattacat
gcattacgaagaggtgcctcggtattgcgagcttcgatgccgaagatcaaagacgttaac
atcatcgacaagtattcaagaattgtttttcccgtcagtttccttctgttcaacgctgtg
tactggattttctacatcctctaa
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