Neodiprion pinetum (white pine sawfly): 124221356
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Entry
124221356 CDS
T08966
Symbol
U4-U6-60K
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124221356 (U4-U6-60K)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npt03041
]
124221356 (U4-U6-60K)
Spliceosome [BR:
npt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124221356 (U4-U6-60K)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Ge1_WD40
WD_LRWD1
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_RFWD3
WDR54
Motif
Other DBs
NCBI-GeneID:
124221356
NCBI-ProteinID:
XP_046487246
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Position
6:complement(31358244..31362083)
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AA seq
527 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERARLTATSAESSDEERDHNRSPSDTPTTAAALGNV
HISNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKNNLRQLGEPICLFGEGP
ADRRSRLRELLASLGEDAIKKKHEDEERPLHQTERDAESTWYHEGPDSLQIARSWIASYS
LPRARDRLEKSREELELPGATRTARRQELLKKLQALSIYCSQIGDSRPISFCQFSPNSKL
LATSSWSGLCKIWSVPECSIARTLRGHTCNVSCIVFHPNATLTEDMLGENASPTCVLASC
ASDGSVKLWGGGKSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDASWRLWDLEQQAE
VLHQEGHAKAVHCISFQCDGSVVATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGVDFSP
NGFHLATASEDNSCKIWDLRKRSCIYTIPAHTNLLSDVKYQRTEGQYLVTASYDNTAKIW
SNKTWQPLKTLPGHDGKVMCCDVSPDHKFIVTSSYDRTFKLWAPENM
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggaccttgtttatgtaaaaaagcaaaaaactgtgcattatggatcc
cttgaggaagctgaacgtgcccggctcacagctacatctgcagaatcttcagatgaggaa
agagatcataataggagtccatcagatacgccaacaactgctgctgccctgggcaatgtg
cacatatcaaatgaatacatggaacttgaagatgagatgtctaaagacaggcaagctttg
ctcgaagaatttgagcggagaaaaaaagccaggcagattaatgtttccactgatgattcg
gaagtgaaaaacaatctgcgccaattaggggaaccaatttgtttgtttggtgaaggccca
gcagacagaaggtccaggttgagagaattattggctagcttaggtgaagacgctattaaa
aaaaaacatgaggacgaggagcggccattgcatcagacagaacgagatgcggaatcaact
tggtaccacgaaggaccagattcccttcaaattgcccgctcgtggatagcatcgtattca
cttcccagggcaagagatcggcttgaaaaatctagagaagaattagagcttccaggggct
acacgtactgcacgtcggcaggaacttctgaaaaaattacaggctctcagcatttattgc
tcccaaattggagacagccgtcccatatcattttgccaattcagtccgaattcaaaatta
ctggcaacatcttcctggtctgggctttgcaaaatttggtctgtacctgaatgctcaatt
gccagaaccctcaggggccatacctgtaatgtaagttgtattgttttccatccgaatgca
acactcactgaagacatgctgggagaaaatgcgtcgcctacatgtgttctagcaagttgt
gcttcagacggaagtgttaagctgtggggtggaggcaaaagtgaagagccgttagcagaa
gttgaaggtcatgagccccatagagtatcaaggattgcatttcatccatcgggtcgcttt
ttaggaacctgttgccacgatgcttcttggcgactgtgggatctggaacaacaagctgaa
gttttgcatcaagagggtcatgccaaggcagtacattgtataagtttccaatgtgacggc
agcgttgttgctacgggaggccatgattcctttggcagagtttgggacctgagaacaggc
cgctgtatcatgtttatggagggtcatttgaaatctattttcggagttgatttttcgcct
aatggttttcacctggctactgcaagcgaggataattcgtgcaaaatatgggatttaaga
aaaagatcgtgtatttacactataccggcacacaccaatttattatcagacgtgaagtat
cagcgtactgaagggcagtatttggtcacggcgtcgtatgacaatactgcgaaaatttgg
tccaacaaaacgtggcaaccgttgaagacattgccaggacatgatggcaaagtaatgtgc
tgcgacgtttctcctgaccacaaatttatagtcacaagctcatatgatagaacatttaag
ctctgggcacctgaaaacatgtga
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