Neodiprion pinetum (white pine sawfly): 124221655
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Entry
124221655 CDS
T08966
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03013
Nucleocytoplasmic transport
npt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124221655 (Upf1)
03015 mRNA surveillance pathway
124221655 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124221655 (Upf1)
Enzymes [BR:
npt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124221655 (Upf1)
5.6.2.5 RNA 5'-3' helicase
124221655 (Upf1)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124221655 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
124221655 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
ATPase
nSTAND3
AAA_22
SRP54
AAA_16
AAA
AAA_7
AAA_10
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
124221655
NCBI-ProteinID:
XP_046487818
LinkDB
All DBs
Position
6:24593002..24599575
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDGGQSQPVQ
VNGTTGGGSSSLDLKITGATQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVMC
NACRKWFCNGRGNTCGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRSFLAWLVKIPSDQEQLRARQM
SAQQMNKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSGI
GHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTDKIHKSNLKVVRLCAKSREAIDSPVS
FLALHNQIKNMKTNNELQKLQQLKDETGELSSVDEKRYRLLKKTAEKELLEAADVICCTC
VGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDF
PWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLYSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKPK
KLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGNQVNGTQNHNPYYQRNVPLDIFSRTH
DTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNLRNRRGATSAKN
KAGLRGSKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGE
FQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacgggcctagcagccaaaccctgactttcctcgacacggaggaa
gcagatttgatcggggcagatacgcaggggagcgaattcgacttcactgacttcacttta
ccctcacccagtcaaacccaggcttcccagcacgacggaggccagagccaacccgttcag
gttaatggcacaactggtggtggtagttcttcgctcgacttgaaaattaccggcgctact
caaagtcttgccgaactccaatttgaagaggaagaagaggaagcatactacaatcgagac
ttgccagaacatgcttgcaaatactgcggcattcatgaagcgtcatgtgtcgttatgtgc
aacgcatgtcgcaaatggttctgcaatggtcgtggcaatacttgtggttcgcatatcatc
aatcacttggtccgtgccaaacataaggaggtcactttgcacagagatggaccattaggt
gaaacggtactggaatgctactcctgtggtgtaagaaatgtttttgtgctgggttttatt
cccgccaaagccgactctgtggtggtgttgctttgtcgacaaccctgtgccgcccaaagc
tctttgaaggatatgaattgggatcaggagcaatggaaaccactaatcgcggatcgcagt
tttctggcttggttggttaagatcccatctgatcaggagcaattgagagctaggcaaatg
tctgctcaacaaatgaacaagttggaagagttatggagagacaatgtagatgcaacgttt
caagacctagaaaaaccaggggttgatgaagagccgcaacaagttcttctgcgatacgaa
gatggatatcaatatcaaaatatatttggtccacttgtgaagttggaagctgactacgac
aagcgccttaaggagtcacagacgcaagaaaacatagaggtacgctgggacgtaggtttg
aacaagaagaccattgcctacttcatgcttgcgaaaacggatggtgatatgaaactgatg
catggtgatgaattgagattgcgctacttaggagagctccacaagccatggtcaggaatt
ggccatgtgataaagatacctgataattacggagaggaagttggcattgaattaaaaaat
aactcaggtgcaccaacagaatgcattagcaactttgttgtggatttcatttggaaaagc
acgagtttcgatcgaatgcaactggctttacgtaaattcgccgttgatgactcctctgtg
tctggatatatttatcacaggcttcttggtcacgaagttgaagaagtattgtttcgctgc
catcttccaaaacactttagcgctccaaatctaccagatctgaatagatcacaagtttat
gctgtcaaacatgccgtacaaagacctttgtcccttatccaggggcctccaggtactggt
aaaaccgtaactagtgcaaccatagtttaccagctagtaaaacaaaacggaggtcccgta
ttggtttgcgcaccctctaatactgccgtcgaccaattgactgacaagatccataagtct
aatttaaaggttgtgcgtttatgtgccaagtcgagagaagctattgactcgcctgtcagt
ttccttgccttgcataaccaaataaagaacatgaaaacaaataacgaactgcaaaagttg
cagcaattgaaagatgaaactggtgaattatcgagtgttgatgaaaaacgttatagactt
ttaaaaaagacggcagagaaggagcttttggaggctgccgacgtcatttgctgcacctgc
gttggtgcaggagacccaagattacaccgtttgaaattccactcgattttgattgatgaa
agcatgcaagctacggaacctgaatgcatggtgcctgtagtcttgggagccaaacaattg
attctagttggtgatcactgccaactaggaccagttgtaatgtgcaaaaaagcagctaga
gctggcctatctcaatctctatttgaacgacttgtcgtactgggtattcgtccgttccgt
ttagaagttcaataccgtatgcacccagacctatctcggttcccatccaactttttctac
gaaggctctctgcagaacggtgtctgtgcagacgaacggaagttactgaaaattgatttt
ccgtggcctgcgcctgacaagccaatgttcttttacgtaacccaaggacaagaagaaatc
gccggtagcggcacgtcgtatcttaatcgaaccgaagcttctaatgttgaaaaaattacc
accagatttttacgttgcggtgtgaaacctgaacagattggagtaatcacaccgtatgaa
ggtcagagagcttatctggttcagtacatgcaataccaaggttctctatactctaaactc
taccaagaaatagaggttgccagtgtcgatgccttccaaggtcgagaaaaagacataatt
atcatgtcttgtgttcggtcaaatgaacatcaaggaattggattcttaaacgatcctaga
agattgaacgttgcacttactcgtgctaagtacggtataatcattgttggaaatccaaaa
gtgttgtcaaagcagcctctgtggaatcacttgcttagtttctataaggaacagaaagtt
cttgtcgaaggacccctgaataatttgaaagaatccatgattcaatttgccaagcctaag
aaactggtaaatgctgctaacccaggatctcactttatgtcaacttctatgtacgacgca
agagaagctctaattcctggctctgtttacgatcgttctggtaatcaggtgaacggtact
caaaatcataatccgtactaccagagaaatgttccgctagatattttcagcagaactcat
gatacgatcagctacattagcccagagagagcacaagctgctatgaacaatgttccggtt
cctgttggaatgttcatgaacatggctcatgttccaccgcgattctacaaccaacatcag
caagccctacaagcaaggcagaatctaagaaatcgcagaggcgcaacttcggctaaaaac
aaagctggccttcggggaagtaaactcagtcaaacggaacaaaatacgcagccctatagc
caaccaggactcccgcttactcaaggaactacgcaaggaatgtcacagccaggttttagc
ctgtcccagccgggtcttagtcaggcggagttgtcacaagactcgtttgcagttggtgag
tttcagtcacaaatggacggtttattgtctcaggattctacttatcaaggagatagaagc
ggattttaccagtcaggccagtcgcaagcaggaggccagttctcccaaccgtactga
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