Neodiprion pinetum (white pine sawfly): 124222215
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Entry
124222215 CDS
T08966
Symbol
mor
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124222215 (mor)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124222215 (mor)
03036 Chromosome and associated proteins [BR:
npt03036
]
124222215 (mor)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124222215 (mor)
Chromosome and associated proteins [BR:
npt03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124222215 (mor)
PBAF complex
124222215 (mor)
GBAF(ncBAF) complex
124222215 (mor)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124222215
NCBI-ProteinID:
XP_046488921
LinkDB
All DBs
Position
6:28010891..28016675
Genome browser
AA seq
1048 aa
AA seq
DB search
MLSLGPKKDGGPNAKFFESPDILGQLDGVKQWLLKNCKKYVQTDPPTNKSLASLVVQLLQ
FQEDNLGKNVSKPPMTRLPMKCFLDFKPGGGLCQILATAFRFKQEQGWRRFDFQVGKSGS
RMDRAIEMLVAAERALVQNRCMTVPCVYVRPDVDKNTASKVKEVVKRHQGTIAEAEADAT
HIVYPPADPLEEEYARPYLRRERSVLLHWYYFPDSYDSWTTLDLPWDFPEGPLGIGSTSG
SDEIIDYRPQYRVSATWALDLDQYNEWMNEEDYDVDDNGQKRVHKYRLSVEDLMAQPSHP
PPSSAKKQKRKRSPSPPPKIGKRKSGRGPAGLQGSSTSLATPKKSRGGVDEEEDLTQGME
DPPAEPRIIEVVASPANPPSIGPGGGSTAGSGSLSTTGNKKQDSELQPLKSGNMADLDEP
IDGDKGSTQAAQEREERGASKERGEGGKGDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTI
EKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVH
AFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSSAAKSL
LDLEKKPAVVGMGPEEKSGLGVMTNFGLKVDQYSRKPAVLKSKQAAGATRDWTEQETLLL
LEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSK
AGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANPDGK
FDPSAGLAQSGIAGTGPPEPPEDPAVSATSATSSSASVTSPQASTAESKKEELQDIKVKE
GVDATQVPPQSMKKEESVESERDQPEKIEVDPKENDDEAKSKGDPEETEAKEKRDKVVRD
AQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMER
EREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQQQQQSQHPPWQASNTQ
QQQQQQQQPPSPQPQVAQPPPHTPPQQA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgctctctttggggccaaagaaggacggcggtccaaatgcgaaattcttcgagtctcca
gatatactgggccaattggacggagtcaaacagtggcttctaaaaaattgtaaaaagtat
gttcaaaccgatccacccacgaataaaagtctcgcgtctttggtcgtccaattgttacaa
ttccaggaagataacctcggaaaaaatgtgtcaaaaccgccgatgacaagacttcctatg
aagtgtttcctagatttcaagcctggcggtggtctttgtcaaatattagctaccgcgttc
agatttaaacaggaacaaggatggcgacgtttcgactttcaagtcggcaagtccggatct
cgcatggatcgtgcgatagagatgttagtggcagcggaacgggcactggtacaaaatcga
tgcatgacagtaccctgtgtgtacgttagaccagatgtagacaaaaatacagcgtccaaa
gtcaaggaagttgttaagcgtcatcagggaacaattgccgaagctgaggctgatgcaacg
cacattgtttatccaccagctgatccccttgaggaggaatacgctcgtccttacttgagg
cgtgaacgctctgttctattgcactggtactactttcccgacagttacgattcatggaca
acattagatctgccttgggattttcctgaaggtcctctcgggataggaagtacaagtgga
agtgatgaaattattgattacagacctcagtatcgtgtgtcggctacttgggctctagat
cttgaccagtacaatgagtggatgaacgaagaagactacgatgtcgatgataatggacag
aagagagttcacaagtaccggctttctgtcgaagacttgatggctcaaccgtctcatccg
ccaccttcgtctgcaaaaaaacagaaacgaaaacgctcccccagtccacctccaaaaatt
ggaaagcgtaaaagtggtcgcggaccggcaggactccaaggttcgtctacttctttggct
actccaaaaaagtctcgaggtggcgtcgacgaagaagaagatctgacacaggggatggaa
gatcctccagctgaaccaaggataatagaagtggtagcaagcccagccaatccaccttct
attgggcctggtggtggatctacagctggtagtggaagtttgtcgacaactggaaacaaa
aaacaagatagtgaactacaacctctaaaatctggcaacatggctgatttggatgagcct
atagacggtgacaaaggaagtacacaagcggctcaggaaagagaggaacgcggagctagc
aaggaacgaggagagggtgggaaaggagatgagccggaagataatgttactgagcaaacg
caccatattgttgtacccagctactcagcttggttcgattacaactcaatccatacgatt
gagaagcgtgcgttgtccgaattttttaatggtaaaaacaaatcgaaaacgcccgaaatc
taccttgcttatcgcaactttatgatcgatacttaccgactaaatccaacggaatatatc
acctctactgcctgcagacgtaatttagcaggagatgtgtgtgccattatgcgtgttcac
gcgtttctagagcagtggggtctcattaattatcaagttgacgcagaatctagaccaacc
ccaatgggtccgccacctacatctcacttccacgttctctcagacactccatctggactg
gcacctgttaatccgaatcctcccaaaactccgcagccttccagtgctgcaaaatctctg
ttggatttggaaaagaagcctgctgttgttggcatgggaccagaagaaaagagcggactt
ggagttatgactaactttggtctgaaggtggatcagtattccagaaaacctgcagtttta
aaaagcaaacaagctgctggtgccactcgcgattggaccgaacaagaaacgctattgtta
ttagaagggttagagctccataaagatgattggaacaaagtttgcgaacatgttggatct
cgtactcaagacgagtgcatacttcatttcttacgtctacctatcgaagatccgtacctc
gaagaaggaggccctgagggtctaggaccactcgcctatcagcctgttccattttccaag
gctggtaacccggtcatgagcacggtagctttcttagcttccgttgtggatccaagagtg
gctgctagtgctgctaaagccgctatggaagaatttgcagcaatcaaagatcaagtgcct
gcagccctactggatcagcatcttcgtaatgttcaagcaagtgctaatccagatggtaaa
tttgatccatcagcaggacttgcacagtccggtattgcaggaactggacctccagaacca
cccgaagatcctgctgtctcagctactagtgcaacttcctcgtctgcaagtgttacttct
cctcaagcttcgactgcggaaagtaaaaaagaggagcttcaggatattaaagtcaaggag
ggggtggatgctacgcaggtgccaccacaatctatgaaaaaggaagagtcagtggagagt
gaacgtgaccagccagaaaaaatagaggtcgatccaaaggagaatgacgatgaagctaag
tctaaaggagatcctgaagaaactgaagctaaagaaaagagagataaggtggttagagat
gcgcaactacaatctgctgcggcagccgcgttagcagctgcagctgtcaaagcaaaacac
ttagcagcggtagaggaaagaaaaatcaagtctttagtggcactactggttgaaacgcag
atgaaaaagcttgaaataaaattgcggcatttcgaggagctggagacaacaatggaaagg
gaacgggagggcttggaatatcagcgccagcaactaattacagaacggcagcaatttcac
ttggaacaattaaaagcagcggaatttcgtgctcgacagcaagcacaccaacggctagcc
caggaacagcagcaacaacagcagagtcagcatccaccgtggcaagcatccaatactcag
caacaacagcaacagcaacaacagccacctagtccgcagccacaggtggcgcaaccgcct
ccgcacactccacctcaacaagcgtaa
DBGET
integrated database retrieval system
