Neodiprion pinetum (white pine sawfly): 124223362
Help
Entry
124223362 CDS
T08966
Symbol
spel1
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124223362 (spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npt03400
]
124223362 (spel1)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124223362 (spel1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
124223362
NCBI-ProteinID:
XP_046491172
LinkDB
All DBs
Position
7:complement(19665836..19680464)
Genome browser
AA seq
922 aa
AA seq
DB search
MAVQPNQQFNMDNATQQSFVRFFKNLPEKPSSTIRFFNRTEYYTLHGSDALFAAKEIYKS
TAGCKMLGAEPYKTEGLILSKSNFENFVRDLLLVKQYRVEVFVNQGSGKNQDWILEYKGS
PGNLVQFEDILFSNNDVAVSTSVMAVKLGGEAKNRIVGVSCVDSVERLISVCEFADDDLF
SNLEALVISLGPKECLIIQGDGSQEFQTLKQLMERSNIMVTLRKKSDFSTDSIVQDMNTL
LNFKKGQQRNAQTLVEMNLKVAMAGTSAIIKYLELTSDEGNFNQFKVKQLEQSRFVRLDA
AAVRALSIEPRGDLPSGTSTGAPNSILNLLDRCRTPQGHRLISQWIRQPLRDIALIKERH
DIVETLVKDNELRSSLMEDHLRRVPDLQQLAKKLAKKKVTLQDCCRIYFCVSHLPVLTEQ
LCNAKYGAAMKAMIVDPLRELISDMDKYQQMIEQTIDLEAAEKGDYMVKPEFNNDLQELK
LKMNDLEEEIQGLINKVATDLSLEAGKVLKLESNQQFGYYFRITLKEEKSIRNKKGYTTI
DSNKSGVRFTNQKLTSLNEDFISVRDQYLEEQKSVISEIINIAAGYTGPVHSIGSVTAQL
DVLTAFALASANAPRAYVRPEMCSSDVGELNLIQARHPCLELQEGVDFIANDVSFKRDEC
TFHIITGPNMGGKSTYIRTTGVVALLAHIGCFVPCDSAKISILDCILARVGADDSQTKGL
STFMTEMIETAAILRTATSNSLVIIDELGRGTSTYEGCGIAWSIADHLATELKPYCLFAT
HFHEITRLAEDVPTVKNLQVTAVVGDNKLTLLYRVKPGVCDQSFGIHVAKMANFPDDVVE
AAEKKLIELEDCQKITFEGSDDPAARRKIIKAGDELIANFAAKCKALDPSLTKPEIENKI
QLYKEEILSHNNPYINALLSSP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaaccaaatcaacagttcaacatggacaatgcgacgcaacagagctttgtc
agattctttaaaaatcttcctgaaaaaccatctagtacgatacgatttttcaacaggaca
gaatactatacgctacatggaagcgatgccttgttcgcggctaaggagatctacaaaagt
acagctggctgcaagatgctcggtgctgagccatacaaaacggaaggattgatcctaagc
aagtccaactttgaaaattttgttcgtgatttgttgctggtcaaacagtacagagtggaa
gtgtttgttaatcaaggatcaggaaagaatcaggattggattctagaatacaaaggatct
ccgggaaatttagttcaatttgaggatattctgttcagcaataatgatgtcgcagtcagt
acctcggttatggctgtgaaacttggtggtgaggcaaaaaacaggatagtcggagtgagt
tgcgtagattcagttgagcgtttaatttctgtttgcgaatttgccgacgacgatttgttc
tcaaacctagaagcgcttgtgatttcccttggaccaaaagaatgcttaataattcaaggg
gatggcagtcaagagtttcaaactttgaaacagttaatggaacgaagtaacatcatggtc
acgctaagaaagaagagtgatttttcaacggattcaattgttcaagacatgaacacgctt
ctgaacttcaagaaaggccagcaaagaaatgcccagacacttgtggaaatgaatttaaaa
gtggctatggcaggaacatcagcgattatcaaatatcttgagttgacatcggacgaagga
aatttcaatcagttcaaggtaaaacaattggaacagtctagattcgtcagattagatgca
gcagcagtgagagcgctgagcatcgaaccacgcggcgatcttccttctgggacaagtaca
ggcgctccgaatagcatactgaatctcttggatcgatgcagaaccccacaaggacacaga
ttgatatctcagtggattagacaaccgctgcgagacattgcgttgatcaaagaacgacat
gacattgttgaaactttggtaaaagacaacgaattgaggtcctctctgatggaagatcat
ctgagacgcgtacccgatcttcagcagcttgcaaaaaagttagccaaaaagaaagtcact
ctacaggattgttgcagaatttacttttgtgtctcgcacttgccagtactcactgagcaa
ttgtgtaatgcaaaatatggcgcggcgatgaaggcaatgatagtagatccactcagagag
cttatttctgatatggataagtatcaacaaatgatagaacaaactattgatttggaagct
gcagagaagggtgattacatggtgaaaccagaatttaataacgatttgcaagagcttaag
ctgaaaatgaatgatttggaggaagaaatacaaggcctgatcaacaaagttgccacagac
ttgtctcttgaagctggaaaagttctcaaactggaatcgaatcaacagtttggatattat
tttcgaataacgttgaaagaagaaaagtctatcaggaacaagaaaggctacacaactata
gattcaaacaaaagcggcgtgaggtttacaaaccagaaactgacgtctcttaatgaagac
ttcataagcgtcagggatcagtatttggaagaacaaaaatctgtcatttcagaaatcatc
aacatcgcagctggatatactggaccagttcattccatcggttctgtgacagctcagctc
gacgtacttacagcttttgcattagcttcagctaatgctccgagagcttatgttagacca
gaaatgtgttccagtgatgttggcgagttaaatctcattcaggcaagacatccttgccta
gaacttcaggaaggggtggatttcatcgcaaacgatgtcagcttcaaaagagacgaatgc
acctttcacataataactgggccaaatatgggcggaaaaagtacgtacattcgaacaaca
ggagttgtcgctctgctagctcacattggttgttttgtgccttgtgatagtgcaaaaatt
tcaatacttgattgtattttggcgagagtcggagccgatgattctcaaactaaaggactt
tctaccttcatgactgagatgattgaaacagcggctattttaaggactgcaacgtctaac
tctcttgtcataatcgacgaacttggtagaggaacttccacgtatgagggttgcggaata
gcttggtctatagccgatcatttggccacagaactcaaaccttactgtctcttcgctact
catttccatgaaataacgaggctagcagaagatgtaccaacagtaaagaatctccaagta
actgcagttgtcggagacaacaagctcactttactgtatcgcgttaaaccaggtgtttgc
gaccaaagtttcggaatacacgttgctaaaatggcaaactttccagacgatgttgtggag
gccgctgaaaaaaaactgattgaattggaagattgtcaaaaaataacttttgaaggctcg
gatgatccagcagctagaagaaaaattataaaagctggagacgagctgatcgcaaatttt
gcagccaaatgcaaagcactcgatccatcattaacgaagccagaaattgaaaacaaaatt
cagttatacaaagaagagattctttctcacaacaatccttatataaatgcactgttgtcg
agtccgtga
DBGET
integrated database retrieval system
