Neodiprion pinetum (white pine sawfly): 124223422
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Entry
124223422 CDS
T08966
Symbol
Hel89B
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124223422 (Hel89B)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
124223422 (Hel89B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_2
TPR_Trm732_C
CEP104-like_TOG
HEAT_EZ
HEAT_ECM29
RIX1
TPR_TTI1_C
Motif
Other DBs
NCBI-GeneID:
124223422
NCBI-ProteinID:
XP_046491336
LinkDB
All DBs
Position
7:complement(5698752..5714648)
Genome browser
AA seq
1925 aa
AA seq
DB search
MTSRLDRLFVLLETGSSAVTRRAAAQQLGEAQRLHPHELHHLLARVSTLLKSPQWDTRVA
AAHAVQAILAQVPQWDPKPLHLNVPDAQLQQDETEDGQVRQFSKVNRLSLRDFDMARVLA
RSLHLTGSEGSEYDLVVAETSESPNPQQTEKMFAAKFGLHPRLMGIDTNELFTNDDFAPS
VQTSGVLQTKMPIDETMCQPSGLSRREMNRARRKARQSISKQRSREPDDTQDHQSSVTSG
SGEPYVKRPKQEENATSEASWSGDEGGNWGVPDGTGCWPDTAVEWPLDSFAESLCQDLFS
QKWEVRHGAATALRELVRLHGKGAGKSRDQTKEEMEESHRRWVEDAALRLLCVLGLDRFG
DFVSDQVVAPVRETCAQALGSLLLLMPCTDNSENRENGQKTIKVEVKTEEDNDKIKEGGA
LGVLSVVLKLLEHNEWEARHGALLALKYLLAVRDDLLDELLPRAFPAAMHGLADPVDDVG
AAAASALIPVAGVLPKLLTPSQLEAVVLRLWELLHEQDDLAAACNSFMGLLAAILSLPAA
REHLTPQPLSKVLPRLWPFLGHSSSSVRKATLQTLLTLTGDDGNPKDEQDRWGDAGGSVL
QEALRQVFQRALVEHVAAIQEVAERVWQNLVVRSDLQLLLHASCPLVSTWLCLAMQPEHV
PFSPALLVTATTTQHSSRVTKSCGGNGSDAQSDSSSSGGCGSGGKSASELKVYIGGVETV
APATRRSNVVRARCMAARMLGLLSCYVVRPAPGVIYTADTPSPALCYAKVLLVHLASRSA
LQRTVAGLTMAHWATLEQPHPPTIPDILKEKLLGCLSECVYYDEIAVTFTRLLQETRDYI
ATLKHYKLPLKEGTGLDASAISTGVMTLEQITILTGKTVSSLLNLGTAAGSGNTAVKLKP
KVLDSLEERRRAIESGATATAMQQHALNITSMAALAGAATMLRCLPGADCPLNPLVKPLM
ESIKREENDELQSLAARHLAHLIDLCVERKPSPNHKIASNLCMFLCSDPEFTPRIVGDSQ
PFEGILTLTNRHRHAERVAYNRGGFGGNGGRGPGRPPTTEIPLEELLAYEEPEAKAAKTR
RRGATLALTSVTKLLGAQLSSRLPRLWELMLPAALKNSGPDECSYQQDHQEEATQLVSSL
QVLETVASSLDASLLPPAIACVPRLCNLLAHPYRAVRHMAARCIAVLGTLRTEEVMRQVV
RSVIPLLEPSIEKDSSSTDKVKIIAPAEIDAKRQGAAESLACLVESLGVGIVPYAVLLVV
PLLGRMSDQNQAVRLTCSATFATLVQLMPLDPGAIGDPPLLGDEKAQERHFLEQLLNPRS
IPDTKLPVPVSAELRAYQHQGLNWLAFLNRYRLHGVLCDDMGLGKTLQTLCMLATDHYHH
PQTFPSLVVCPPTLTGHWVYEAEKFFKPKDLSALQYAGPPPEREKLRPRVSRYRLVVASY
DIVRKDIEFFESIQWNYCILDEGHIIKNGKTKSAKAAKRLRAHHRLILSGTPVQNDVLEL
WSLFDFLMPGFLGSEKQFAARYSRPILASREPKAGAKDQEAGALAMEALHRQVLPFLLRR
NKEDVLQDLPPKITQDYYCDLSPLQRTLYEDFRTRHSATLTSPAPANNSLGTHVFQALRY
LRNVCNHPKLVLTPRHPQYHYVCASLKHQQSSLTDIEHGAKLPALKQLLLDCGIGQQQQQ
PVSMTAITTTDGQQQQLVSQHRALIFCQLKAMLDIVEKDLLRVHLPTVTYLRLDGSVPAS
QRHSVVARFNADPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIG
QKKVVNVYRLITRATLEEKIMGLQKFKLLTANTVITTENASMETMGTDQLLDLFSLDTSK
DKRMDGQGGSGSVDGSESGFSGIVGVGRSVLESLPDLWEQQQYDDEYDLESFLSTLRGDN
QPSPV
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacggttggatcgactttttgtacttttggaaactggatctagtgccgtaact
agaagagccgcagctcaacagcttggcgaggcccaacggctgcatccgcatgaactgcat
catcttttagccagagtttctacattattgaagtcacctcagtgggatacgagggtggcc
gctgcccacgccgttcaagcaatacttgcccaagttccacaatgggacccgaaaccccta
cacctaaatgtgcctgacgcccaactgcaacaagatgaaaccgaggatgggcaagtacgt
cagttcagtaaagtcaacagactcagcttgcgagattttgatatggcaagagtgttggca
cgtagtttacatttaaccggatctgagggtagcgagtacgacttagttgtagctgagaca
agtgagtcgcccaacccacagcaaacagaaaaaatgtttgccgcaaaattcggtctccat
cctcgacttatgggcatcgataccaatgaattattcacgaatgacgattttgcaccatcg
gtgcaaacgtctggtgtgttgcaaacaaaaatgcccattgacgagacaatgtgccaaccc
agtggtcttagtcgtcgagaaatgaatcgtgcacggcgtaaggcacgtcagtcaatttca
aagcaacgttccagggagcccgacgatacgcaagatcaccaaagttcggtaacaagcggc
agtggtgaaccatatgttaaaaggccaaaacaagaagaaaacgcaacgtctgaagcatcg
tggagtggcgatgagggaggaaactggggagtcccagacggaaccggatgttggcctgac
actgctgtcgagtggccgctcgattcattcgcggagagtctttgtcaggacctgttcagc
cagaaatgggaagttcgtcatggtgctgcgacagcgttgcgtgaacttgttcggctacat
ggaaaaggtgccggcaagtcacgagatcaaacaaaagaagagatggaagaaagtcaccgt
cgatgggtagaagacgctgcgttgcgactgctttgcgttttgggtctggacagatttggt
gactttgtctcagatcaagtcgtagctccggttcgtgagacttgcgctcaggcacttggt
tccctattattgttaatgccatgtaccgacaattcagaaaaccgtgaaaatgggcagaaa
acaataaaggtggaggtcaaaacggaagaagataatgacaaaattaaggagggcggagca
ttgggggttttgtccgttgtcctgaaactactcgaacataacgagtgggaagccagacac
ggtgcccttttggcactaaaatatttgctcgctgttcgagatgatcttctcgatgaactg
ctaccaagggcatttccagcagccatgcacgggctcgccgatccagtggacgacgttggt
gctgcggcggcaagtgctttgattccggtagctggcgtcttgcccaaacttctcacaccg
tcgcaacttgaagctgttgttctgcggctttgggagctgctgcatgaacaggacgatctg
gccgctgcctgcaacagcttcatgggtctactcgctgcgattttgtctttacctgctgcc
cgtgaacatcttacgccgcaacctttatccaaggttttaccgaggttgtggccgttctta
ggtcactcaagttcgagcgtgagaaaagccacgttacagacgctgcttacacttacggga
gatgatggaaatccgaaagatgagcaggatcggtggggggacgccggtggcagcgttttg
caggaagctttgcgtcaggtgtttcagcgcgcattagttgaacacgtggctgctatacaa
gaagtggcggagcgagtgtggcagaatctcgtcgtacggagtgaccttcagttgctgctg
cacgcttcctgtcctctcgttagcacgtggctttgtcttgccatgcaaccagaacacgta
ccgtttagtcccgctctgctggtgaccgctacaacaactcagcatagctcaagagtgaca
aaaagttgcggtggtaacggaagcgacgctcaatccgattcgagcagtagcggtggttgc
ggaagtggcggcaagtcagcgtcggagttgaaggtctacataggtggtgtagaaactgta
gctccagcaacacgtcgatctaatgttgttcgtgcacgttgtatggcagcaagaatgctt
ggcctactttcgtgctatgtagtccgccctgctccaggggtaatttacacggcagacaca
ccgagtcctgcactttgctacgcgaaagttctgctggtccatttagcctcacgatccgcc
ctgcaacgcacggtcgcgggactcacaatggcccattgggcaaccttagaacaaccccat
ccgccgacgatacctgatattctcaaggagaagctcttgggctgtctgagtgagtgcgtt
tactacgatgagattgctgtgaccttcactcgtttgttacaagagacgcgtgactatatc
gctactttaaagcactacaagttaccgctcaaggaaggaaccggtctcgatgcatcagca
ataagtacaggggtgatgactcttgagcaaatcactatacttacggggaaaactgtttcg
agcctgttaaacttaggaactgctgctgggagcggcaataccgcagtgaaattgaaaccc
aaagtgttggacagtttggaggaacgaagacgtgccatagaatcaggtgctactgcaact
gcgatgcaacagcatgcgctcaatataacatccatggcagcgctcgcaggagctgcgaca
atgctgcgctgtcttccgggcgcagattgcccactgaaccctctcgtaaagccgctcatg
gaatcgataaagcgggaagaaaatgatgaattgcaaagtcttgctgcacgccatctcgca
caccttatagatctctgcgtggaaaggaaaccctctccaaatcacaaaattgcttcaaac
ttgtgtatgtttctttgctcggatccggagtttacaccacggatagtaggggacagtcag
ccatttgagggtattctcacattgacgaacagacatcgacacgcagaaagagttgcttac
aatcgtggtggttttgggggtaacggaggtcgcggtcctggtagaccaccgacaacggaa
atacctctcgaagagttactggcatacgaagaaccggaagcgaaggcggcgaaaactcgt
cgccgtggtgcaaccttggcgcttacttccgtaacaaagctgcttggagcccagctatct
tcgcgtctaccacgtctctgggaattgatgttaccagcggctctcaaaaactctggtccc
gacgaatgttcctatcagcaagaccatcaggaagaagcgactcaattggtgtccagtctt
caagtactggaaacagtcgcctcaagtcttgacgcgtcccttttaccgcccgcgattgca
tgtgtaccacgactttgcaatcttttggcacacccttacagagctgtcagacacatggct
gcccgttgcattgctgtattaggcactctgcgcaccgaagaggtaatgaggcaggtagtt
cgaagcgtaataccactcttagagccgagtattgagaaagacagttcaagtacggataaa
gtcaagataatagcccctgctgaaatagatgctaaacgtcaaggagcagccgaatcactc
gcttgtttggtggagagcttaggtgtagggattgttccatatgctgttctactcgttgta
cctttacttgggcgaatgagtgatcaaaatcaagctgtacgcctcacctgcagcgcaacc
ttcgcgactcttgttcaactcatgccactcgatcctggagcaattggagatccaccccta
cttggtgacgaaaaagctcaagaaagacattttctggaacaactactaaatccacgaagc
attcctgatactaaattgccggtcccagtgtcggctgaactacgtgcttatcaacaccag
ggattaaattggcttgcctttttgaaccgttaccggctccatggagttttgtgcgacgac
atgggtctcggaaagactttgcagacattgtgcatgttggccaccgatcactatcatcat
ccgcaaacatttccgagtctcgttgtttgcccgcctactttgactggccactgggtttac
gaggctgaaaaattcttcaaaccaaaggatctgtcagccttgcaatacgccggaccacca
ccggaacgcgaaaagttacgtccacgggtatctcggtaccggttagttgtcgccagctac
gatatcgtaaggaaagatattgaatttttcgaatccattcaatggaattattgtatactc
gacgagggacacattattaaaaatgggaaaacaaaaagtgcgaaagctgccaaacggctc
agggcacatcatcgtctgatactctccggcacaccggtgcaaaatgatgtcctcgagtta
tggtctcttttcgactttctcatgcctggattccttggtagtgagaaacagtttgcagca
cgttattcacgacctatattagctagccgagaaccgaaagcaggagcaaaagatcaggaa
gcaggcgcgttggctatggaagcactccatcgtcaggtgttaccttttttactgaggcgc
aacaaagaggacgtattgcaagacctacctccgaaaattactcaggattactactgcgac
ctgtccccgctacaacgtactctctacgaagatttccgtacccgacattcggcgactctc
accagcccagcgccggccaataattcattgggtacacacgttttccaggctctacgttat
ctccgaaatgtctgcaatcatccaaaattagtgcttaccccgcggcatccgcaatatcat
tacgtatgcgcttcacttaagcatcaacagagttctctcaccgacattgaacacggtgcc
aaacttcccgcactgaagcaactcttgctagattgcggtatcggtcagcaacagcagcaa
ccagtctcaatgactgctataacgacgactgatggccagcagcaacaattggtcagccag
catcgagccctgatcttctgccagctaaaagctatgctggatatcgtggaaaaagacttg
ctgcgagttcatttacccacagttacctatttacgtcttgacggaagcgtaccggcgtca
caacgccattctgttgttgcccgtttcaacgccgatccgtcgatcgacgttttactttta
actactcaagtcggcggtctgggattgaatctaaccggagcagatacagtgatattcgtt
gagcacgactggaatccaatgaaagatctacaggcaatggatcgagcgcatcgtatcgga
cagaagaaagttgtcaatgtttatcgattgattacgagggcaacactcgaagaaaagatc
atgggattgcaaaagttcaaacttctcactgccaacactgtcatcacgacggaaaacgca
tctatggagaccatgggaacagatcagttactggacctgttctcgttggacactagcaag
gataaaaggatggatggacagggaggttctggtagtgttgatggaagtgagtctggattt
tctggcatcgttggagttggtcgatctgtgttagaaagtctcccagatctttgggagcag
caacagtacgatgacgaatacgatcttgagtctttcctttcaacgctacgtggtgataat
caaccaagtcctgtttag
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integrated database retrieval system
