Neodiprion pinetum (white pine sawfly): 124223498
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Entry
124223498 CDS
T08966
Symbol
RpII215
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03020
RNA polymerase
npt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124223498 (RpII215)
09124 Replication and repair
03420 Nucleotide excision repair
124223498 (RpII215)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124223498 (RpII215)
03400 DNA repair and recombination proteins [BR:
npt03400
]
124223498 (RpII215)
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124223498 (RpII215)
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124223498 (RpII215)
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124223498 (RpII215)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
124223498
NCBI-ProteinID:
XP_046491458
LinkDB
All DBs
Position
7:complement(18894948..18905691)
Genome browser
AA seq
1899 aa
AA seq
DB search
MATNDSKAPVRVVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRHSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKDGQEQQQADKKPGHGGCGRYQ
PNLRRSGLDVSAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWM
IVTVLPVPPLSVRPAVVMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMHLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIHKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFTEDIVREMMGSGDVISVLEQEWEQLNKDRIALRE
IFPSGESKVVLPCNLQRMIWNGQKIFHINKRAPTDLSPIRVIQGVKDLLEKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVFPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVVTDTGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMAVGAGMMGGAGMFFGSAAT
PSMSPQMTPWNQMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSVYSPQ
PGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQRTASASTGYSPSSPNYSPTSPTYSPSSSQYSPTSPTY
TPTSPSYSPTSPTYSPPARGYSPTSPTYSPASPAYETDD
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacgactcgaaggcgccggtgcgcgtcgtgaaaagagtgcagtttggtatt
ctttccccagatgaaattcgccgtatgtcagttaccgatgggggaatccgtttcccggaa
acgatggagggcggccgcccgaagcttggcggtctcatggaccctagacaaggggtgata
gatagacattctcgatgtcagacatgtgcaggcaacatgacagagtgccctggacatttt
ggacacattgatttggccaaaccagtatttcacgttggtttcatcacaaagagtatcaaa
atattgagatgtgtttgtttctactgctcaaagcttcttgtcagtccacacaatccaaag
ataaaagaaattgtcatgaagaccaaaggacagccccgaaagcgattaacattcgtatat
gacctctgcaaaagtaagaatatctgtgaaggtggagatgaaatggacataaacaaggac
gggcaggaacagcaacaggcggataaaaaaccaggacacggaggatgtggtaggtatcag
ccaaacctgagacgatcaggcctggatgtgtccgcggaatggaaacacgtcaacgaagat
tcacaagaaaaaaagattgtattgaccgcggaacgtgcctgggagatactgaaacacata
acggatgaagagtctttcattcttggtatggaccccaagtttgctaggcccgattggatg
atcgtcacggtacttccggttcctccactctcagtcagaccagcagtcgttatgtatggc
tcggcaaagaatcaagatgatttaacgcacaagcttgctgatattataaaatcgaacaac
gagttattgaggaatgagcaggctggtgcagctgcgcacgttatatcagaaaatataaaa
atgctgcaattccatgtggccacacttgtagataacgacatgcctggcatgccgaaggcc
atgcaaaaatctggcaaaccattaaaagctattaaggcgagattaaaggggaaggaagga
agaatcagaggtaatcttatgggcaaacgtgtggacttttcagcgcgtacggtcatcacc
ccagatccaaacctccggattgaccaagtcggtgtcccccgtagcatagctcagaattta
acgtttccagaaatagtgacacctttcaatatcgacaaaatgcaggaactcgtgcgacga
ggtaactcgcagtatcccggggcaaagtacattgtccgagataacggggagagaatagat
ctaaggtttcacccgaaaccctcagaccttcacctccaatgtggatacagagtagaaaga
cacataagggacggcgacctcgtgattttcaaccgacaaccgaccctgcacaaaatgagt
atgatgggacacagagtcaaagttctaccttggagtacattcagaatgaatcttagctgc
acttctccgtacaacgctgatttcgatggtgacgaaatgaacctgcacgtacctcagtcg
atggagaccagagctgaagttgagaacattcacgtcacacctcgacagatcattacacct
caggcaaacaagcctgtcatgggtattgtgcaggatacgttgactgccgttagaaaaatg
accaagagagacgtattcatagaaaaggaacaaatgatgaacattttaatgcacttaccc
agctgggatgggaaaatgccccaaccctgcatcctaaaaccaaaaccattgtggaccggg
aagcaaatattctccctgatcattcctggcaatgtgaacatgatcagaacccacagcaca
catccagacgaggaggacgacggaccttacaagtggatatcacccggagatacaaaagtt
atggtcgaacatggggaactggttatgggtattctgtgtaaaaagacattaggtacctca
gccggatctcttcttcatatttgtatgttggaattgggacacgacgtgtgcggtcgtttt
tacgggaacattcaaaccgtgattaataactggctgctgctagagggtcactcgattggt
attggagatacgattgccgatcctcaaacatacttggaaattcaaaaggccatcaagaaa
gccaaggaggatgtaatagaggtgatacacaaggcgcacaacatggaactggaaccgaca
ccaggtaacacgcttagacaaaccttcgagaatcaggtaaacagaatcctaaacgatgct
cgtgacaaaactggtggttcggcgaagaaatctcttacggaatataacaatttgaaagct
atggtcgtatctggttcaaagggatcgaacatcaacatttctcaggtcattgcgtgtgtc
ggtcagcaaaacgttgagggtaagagaataccattcggattccgcaaacgcaccctgcca
catttcatcaaagacgactacggtcctgaatcaagagggttcgttgaaaactcatacctt
gccggtctcacaccatcagagttttatttccacgctatgggaggtagagagggtctcatt
gataccgccgtcaaaactgccgaaactggatacattcagcgacgtttgatcaaagctatg
gagtctgttatggttcactatgacggaacagttaggaattctgttggacagcttattcag
ctgcgttacggagaggacggactttgtggtgaaactgtagaattccaaaacttgccaact
atcaaattgagcaacaaggcatttgaaaagaaattcaaattcgatccaactaacgagaga
taccttcgtcgtatattcacagaagacattgtccgtgaaatgatgggctccggagatgta
atttcagtacttgagcaagagtgggaacaattgaacaaagatcgtattgcattgcgtgaa
atttttcccagtggtgagtcaaaagttgtgttaccgtgcaacttgcagagaatgatatgg
aacgggcaaaaaatatttcacatcaacaaaagggcgccaaccgacctcagccctatcaga
gttatccaaggtgtcaaggatttgttggaaaagtgtattatcgtggctggtgacgacaga
ttgagcaaacaggctaacgaaaatgctaccctgttgttccaatgtttggtacgctcgact
ttgtgcaccaaatgtgtttctgaagaattcagattgtccaccgaggcttttgagtggctg
attggtgaaattgaaactcgattccagcaggcacaggtattccctggagaaatggtgggg
gcgttggctgcccagtctcttggtgaacctgcaacacagatgacgctgaacactttccac
tttgctggagtatcgtccaagaacgtaactttgggagtgccgaggctaaaggagataatc
aatatcagtaaaaaaccaaaggctccttcgctaactgttttcttaaccggagcagctgcc
agagatgcggagaaggccaagaatgtactttgtcgattggaacatacaactttgcgaaaa
gtcactgcaaatactgcaatctactatgatcctgatccccaaaatacagtgatcgccgaa
gatcaagagtttgttaacgtttattacgagatgccagattttgatccgactaaaatctca
ccgtggcttttgcgtatcgagttggacaggaagagaatgacagataagaagttgactatg
gaacagatagctgaaaaaataaatgctgggtttggagatgatctcaattgcatattcaat
gacgacaatgctgagaaattggtattgcgaataagaataatgaacagtgatgacaacaaa
tttcaagataccgaagaagagaccgtcgacaaaatggaggatgatatgttcttacgatgc
attgaagccaatatgcttagcgatatgacattgcagggaatagaagcgatcggcaaagtc
tacatgcatttgccacagacagattcaaaaaagcgtattgtagtcaccgataccggggag
ttcaaagctattgctgaatggcttttggaaactgatgggacaagccttatgaaagttttg
agtgaaagggacgtcgatccagtacgtacattcagtaacgacatctgtgaaatattccaa
gtattgggtattgaggctgtgcgtaaatcagttgaaaaagaaatgaatactgtactgcaa
ttctatggtctgtacgtgaactatcgacatcttgcgctgctttgtgatgtcatgactgct
aaaggtcatctcatggctatcactcgtcacggtataaacagacaggacaccggagcactc
atgagatgttcctttgaagaaacggtcgatgttttgcttgatgccgcatctcatgctgaa
gtcgatccgatgagaggtgtgtccgaaaatattatcatgggacaactaccgcgtcttggc
actggctgttttgacctcctcctcgatgcagagaagtgtaaggctggtatagaaatacca
atggcagtgggagctggaatgatgggtggggctggtatgttcttcggaagtgctgctaca
cctagcatgagtcctcaaatgacaccttggaaccaaatgggcgcaactcctggttacgga
gcctccagcatgtctcctgccttgggaagtggcatgacacctggaggagcctgtttttct
ccatcgggagcatcagatgcgtcaggtttatccccagcctactctgtctattcaccacaa
cctgggagtccgggcagtccagggcccagcatgagtccctacccgatgtctccggcaggt
ggagcctcaccaagttactctccaacgtcaccggcatacttaccaacgtcacccagtatg
acaccttccagtccaaattactcaccaactagtccaacgtactcgccaactagtccgaat
tactcaccgaccagtcctagctactcgccgacaagcccaagctactcgccaacgagtcca
agttattcgcccactagtccgagctactcaccaacttccccaagttattcgccgactagt
ccgagctattcacccacgagtccgagctactcgcccacgagtccgagctactcaccgact
agcccgagctactctcccacgagtccgagctattcgccaacgagtccaagctactcaccg
actagtccaagctactcacctacgagtccaagttattcaccaacgagcccgagctactcg
cccaccagtccaagctactcgccaacaagtccaagctactcacccagctctccaaattat
acacctgcttcgccgtcgtattcccccactagcccctcttactcgcctagttcacctcag
tattcgcccgccagtccaagctactctcctagcagtcctaaatactccccaaccagtccc
agctactcccctacctccccgtcgttcgccggtacatcgccgcagtacacgccggctagc
cccacttactcgccgactagcccaacctactcgcctacgagccccagctactcaccaagc
tctccgcaacgcacagcttctgcaagcacggggtactcgcccagcagtcccaactactcg
ccgaccagtccaacatactctccgtcgagctcacagtattcgccgactagtcccacctac
acaccaaccagcccaagctactctcctacaagtcctacatattcgccgccagcacgtggc
tactctccgaccagtcctacttattcgcctgcgtcgcctgcctatgaaactgacgattaa
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integrated database retrieval system
