Neodiprion pinetum (white pine sawfly): 124223979
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Entry
124223979 CDS
T08966
Symbol
Vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
npt
Neodiprion pinetum (white pine sawfly)
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
npt04131
]
124223979 (Vps50)
Membrane trafficking [BR:
npt04131
]
Protein recycling
Others
EARP complex
124223979 (Vps50)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Syndetin_C
Vps54_N
WHD_UBR1
DUF4037
DcpS_C
Motif
Other DBs
NCBI-GeneID:
124223979
NCBI-ProteinID:
XP_046492396
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Position
7:complement(19431786..19436775)
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AA seq
947 aa
AA seq
DB search
MDESKVGVLLRKHIDMEDIKFKFLSLIHKQNQAKIPSMGLNPDLLNPIESQGLNDIQSDA
SHSTESELLPDQDILESIESVYYESDDCFDCCRHELQKLPEVLNSKVIERDYKRLKQEHQ
VVSKKVLQLILQKQSLCQKEFERILYIQEELQNALEICRSGRTDLSLAKKQFTTASLGIL
ANYQKKQVVQGLLHSLNTIKTLQRTEDRLQELLNEGNYPGAISLLLECQRAAERYKHFHC
VAALNGKLQDTLEQAEETLDQTLAKMCTEFEVGTYLSVQGAYRLLGKTQTAMDQLHMHFT
AAIHNVAFMAVHAFTGGDTKRPYKQLCQSVSHETFLPCLIELCKSLWAILISYCQVVNWH
NTHESWSDETEEKDLEATFNKQYVKQKLENGMSRMWHDVETKISTYLLGADLAYFKFEQF
VQILGIVHRLIEVGEELCSSQSENLQESIRKQCSSYFAHYHASRLDELKIFLENDGWELC
PVKPSFVVTQLQEFKSLKTVLNSCKPRNSPDESTLSQDGSSVIGGLVQRYLDNGVTPFDV
ILDEAADEDILANIGDAPSGYFSDDSDDDIPEELKCDFVDEPDQSKPSKKKHKQQFAGPM
VTNTTLSVLRVCGKYLQMSRLFRSIAVTVIQNMTQFFELCLYTVHMFFTSDLQINSDTLY
TPKLKLTLARIRETLMADSAVTTESGAQSHKVTQPCLSSIVNLTQPEKIHGLMKRVTAVE
SLIFLGQQYEILRPYLEHLVASPCHGFLHQFYSQTIAAATDLRKPVYMAAASQSFDVGGI
LTLMSKVNWEVRDVMSQHSSYIDNLLRDIQILSMRLEEIGNRIPLPIIVYNSVWENIAHL
ITHTLVEGFSNAKKCSNGGRALMQLDFTQLMSKFEKLTSLRPMPHREYVEAYVKAYYLPE
NILEEWIKQHKEYSTKHLIGLISCGCQNNKKTRQRLISIIEEERPSR
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagtaaagtgggagttttgttgagaaaacacatcgacatggaggatatcaag
ttcaagttcttatcgctgattcacaagcagaatcaggctaagatcccgtcaatgggattg
aatcccgatctcctcaacccaatcgaatctcaaggccttaacgacattcagtccgatgct
agtcattcgactgaaagcgagctgcttcccgatcaagacattctggaatccatagaatct
gtgtattacgagagcgatgactgctttgattgttgtcgtcatgagttacagaaacttccc
gaagttctgaattctaaagtaatcgaaagagactacaaaaggcttaaacaagagcaccaa
gttgtttctaaaaaagtgttacagctaatattgcaaaagcaaagcttatgccaaaaggag
ttcgaaagaatcttgtacattcaagaagaacttcaaaatgccttggaaatttgccgaagt
ggaaggacggatttaagccttgctaaaaaacagttcaccactgctagtcttgggattttg
gctaactatcaaaagaaacaagtcgttcaagggcttctgcatagtttaaacaccataaaa
accttacaacgaacagaggaccgccttcaggaacttctgaacgaagggaattacccagga
gcaatatcgctgctccttgaatgccaaagagctgctgagagatataaacattttcattgc
gtagccgcactgaatgggaaactccaggacaccttggaacaggcggaagaaactctggat
caaacgctggcaaaaatgtgtacagaatttgaagttgggacgtatttgtctgtccaagga
gcgtacagacttctaggaaaaacccagacggcaatggaccaacttcacatgcactttaca
gcagctattcataacgttgcttttatggcagttcacgctttcaccggtggtgacacaaag
aggccttataaacagctctgccagtcagtctcgcacgagacatttctaccttgtttaatc
gaactgtgcaagtctctctgggccattttaatttcctattgtcaagttgtcaattggcac
aatacgcatgaaagctggtcagatgagactgaagaaaaagatctagaagctacctttaat
aaacagtatgttaagcaaaagctggaaaatggaatgtccagaatgtggcacgatgtagaa
accaaaatatccacgtatttgttgggcgctgatttggcctacttcaagtttgagcagttt
gtacaaattttgggaatcgttcataggttaatcgaagttggggaagagctctgctcaagt
cagtcagagaatctccaagaatcaataagaaaacagtgctcttcctactttgctcattac
cacgcgtctcgattagacgagttgaagatatttttggaaaatgatggctgggaactttgt
cctgttaagccatcgttcgttgtcacgcaactgcaagaatttaaaagtttgaagactgtc
ctcaatagttgtaagcctcgcaatagccctgacgaatctaccttgagtcaggatggtagt
tctgtcattggaggactggtccaaagatatttggataacggtgtaacgccctttgatgtc
atcctggatgaagctgctgacgaagacattttggccaacattggagatgcaccttctggg
tatttttcagacgattctgacgacgacattccggaggaactgaaatgtgattttgtagat
gagcccgaccaatcgaaaccctcgaaaaaaaaacataaacaacaatttgctgggccaatg
gtaacaaacacaacgttgagtgtgctcagagtttgtggaaagtatctacaaatgtcaaga
ttatttagatccattgctgttactgttattcaaaatatgacacaattctttgaactgtgt
ctttacactgtacacatgttcttcacttcggatctgcaaataaacagcgacacgttgtac
actccaaaattaaagttgaccttggctcgaatacgcgagactttgatggcagacagtgca
gttacgactgagagtggagctcagtcacataaagtaacacaaccgtgtctctcttcgata
gtgaacttgactcagccagaaaaaattcatggcttgatgaaaagagtgacagccgttgaa
tctctgatatttttgggacagcagtacgaaattttgaggccttatttggagcacctagta
gcttctccctgccacggatttcttcatcaattctattcccaaacgattgcagcagctaca
gatctccgaaaacctgtttacatggctgctgcatctcagtccttcgatgttggcggtata
ttaacgctgatgtcgaaagttaattgggaagtgagagatgttatgtcacagcacagcagt
tatattgacaatctattaagggacattcaaattttaagcatgaggcttgaggaaattggg
aacagaataccacttcctataatagtgtacaattcagtgtgggaaaatattgctcacttg
atcacacacactttagtcgaaggtttctcgaatgcaaagaaatgttcaaatggaggcaga
gccttgatgcagttggattttacccaattaatgtcgaagtttgaaaaattaacatctttg
cgacctatgccgcacagagaatacgtcgaggcatacgtcaaggcttattatttgcctgaa
aacatattggaagaatggataaagcaacataaggaatattctacaaaacatttgatcggt
cttatatcgtgcggatgtcaaaacaacaaaaaaacccgacagcgattaatatccatcata
gaggaggaacgaccgagcagataa
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