Neodiprion pinetum (white pine sawfly): 124224725
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Entry
124224725 CDS
T08966
Symbol
Usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124224725 (Usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npt03041
]
124224725 (Usp39)
Spliceosome [BR:
npt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
124224725 (Usp39)
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Ortholog
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GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124224725
NCBI-ProteinID:
XP_046492869
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Position
1:4140022..4167432
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AA seq
507 aa
AA seq
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MMASRKQGSKLKRKLVEHGSDSDDDNDAQQKTYRSNSEAPRLCPYLDTINRQFLDFDFEK
LCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAESHHVFLNLHTLKFYCLPDNYEIV
DSSLDDIKYVLNPTFDKWQISQLDKSDKLSRAIDGSMYSPGIVGMNNIKANDYCNVILQA
LSHVTPLRDFFLREYNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFKAHVSPHEMLQA
VVLWSKKRFQFTEQGDPVDFLSWFLNALHLALNGTKKKDSSIIYKTFLGHMRIYTRKIPP
LELEESQRSELLNTLEYGETVTESPFLYLTCDLPPPPLFKDQFTENIIPQVNLYTLLNKF
NAVAEKEYKTYKENFMKRFEITELPPYLILYIKRFTKNTFFVEKNPTIVNFPVKNVDFGD
ILTPEVKARHPYTTYDLVANIVHDGEPGQGTYRVHVLHRGTGQWYEMQDLHVTQILPQMI
TLTEAYIQIYELRREAGFETEGFQTAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgtccaggaaacagggaagtaaactaaagaggaaattagtggaacacggcagt
gattcggacgacgataacgatgcgcagcaaaaaacctatagatcgaactcagaggctcca
cgtctgtgcccttacctcgatacgatcaatcgtcaattcttggattttgattttgagaaa
ttgtgttctgtgtctctttccagaatcaacgtttacgcttgtttagtttgtggtaaatat
ttccaaggtagaggcactaacactcacgcctatactcatagcgtcgctgaaagtcatcat
gtatttcttaatcttcacacgcttaaattttactgtttaccggacaactatgaaattgtc
gattcatcccttgacgacataaagtacgttctaaatcctacttttgataaatggcaaatt
tctcagttggacaaaagtgacaaattatccagagctatagatggctcgatgtattcaccc
ggaatagtcggaatgaacaacattaaggcaaatgattactgcaacgtcattttgcaggct
ttgtctcacgttactccattgcgagatttctttctgagagaatataattactcccatgtg
aaacgaccgccaggagattcgtcttaccttctagtccagaggttcggagagttgatgaga
aagttatggaatcccagaaatttcaaggctcatgtcagcccgcatgaaatgcttcaagct
gttgtattgtggagcaaaaaaagattccaattcacagaacaaggtgatccggtggatttt
ctgtcctggtttctcaacgcgttgcatctggcgctaaatgggacgaaaaaaaaagactct
agcattatatacaaaacgtttcttggccacatgcgaatttatacacggaaaataccgcca
ctagaactggaagagagtcaacgaagtgagcttctgaatacactcgagtatggagaaacc
gtaactgaaagccctttcttgtacctgacttgcgatctgcccccacctccgctcttcaag
gaccaatttacggaaaatatcattcctcaggtgaatttgtatacattactaaacaagttt
aatgcagtagccgaaaaagagtataaaacgtacaaggaaaatttcatgaagagatttgaa
atcaccgaactaccaccttatcttattttgtacatcaagagatttacgaagaatactttc
ttcgtcgagaagaatcccaccatcgttaattttcccgtcaaaaatgtagatttcggtgat
atcctcacgccggaagttaaggctagacacccgtacacgacgtacgacttggtagcgaac
atagttcacgacggtgagcccggtcaaggaacgtacagagttcacgttttgcacagaggc
acaggccagtggtatgagatgcaggatttacacgtgacgcaaatattaccgcaaatgatt
acgttgaccgaagcttacattcagatctatgaattacggagagaagctggcttcgaaacc
gaaggattccagacagcgaaataa
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