Nostoc punctiforme: Npun_AF186
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Entry
Npun_AF186 CDS
T00713
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
npu
Nostoc punctiforme
Pathway
npu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Npun_AF186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npu03019
]
Npun_AF186
03400 DNA repair and recombination proteins [BR:
npu03400
]
Npun_AF186
Enzymes [BR:
npu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Npun_AF186
Messenger RNA biogenesis [BR:
npu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Npun_AF186
DNA repair and recombination proteins [BR:
npu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Npun_AF186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
UvrD_C
Helicase_C
AAA_19
ResIII
UvrD_C_2
AAA_22
AAA_11
AAA_12
Flavi_DEAD
AAA_30
Viral_helicase1
P-loop_SecA
ISN1
Motif
Other DBs
NCBI-ProteinID:
ACC85046
UniProt:
B2JAU2
LinkDB
All DBs
Position
pNPUN01:245865..250892
Genome browser
AA seq
1675 aa
AA seq
DB search
MQDLSNIDLFYAYLDLEINSENNIYRIGLVSLNLTKDFYQENLNQAYEEIRKLKNSNLAV
CGHNFRRFDYPYLIEQEQQLSSWHIIDTLELSILAFPLQHSHKLNKYYKQSEYSSNNPLE
DAQATRLLLGQQLEALFKKPDEVQQIYIWLLTCGCDDADLAYQQFFSDHLGLKIEQPAIE
MLPETMLKRINQSYLQQLWSSPQTYDFEIRLCVAGLLAWNYECNTNESKQVFCDWLRHLN
GFQAVLENLRPLSTDEFAISSYLEYFEIPSFRPLQSEAVQAIINNDRPLVLMPTGGGKSL
CYQLPAFMFHERHKALTIVISPLQALMADQVADLEQAGFFFSTFINGNLSAAERRQRLEE
LRFGSKGLLYISPEQLRSMSIRALLEQRPPVLWVIDEAHCVSQWGHDFRPDYRYIPKFIQ
ELYQERQLAMPLLALMTATATVKVVEDIKKLFAQYQLNINRTIDGAITRENLTFQVIPVA
GNKEQVLLEQVKEAIKLGGSTLVYTTTRKNAEKLAELLNQSHIKAKYYHGKLAKEKKQEV
LQEFKSGKLNVITATCAFGMGINRKDVRAVIHHSMSANLEGYVQEAGRAGRDGEPAVCTL
LFDPKDADTVFRLQSLNQLSEQDLKNVLISTRHIRDRTFGSARDDWFWVTTNEIFQEGDF
DEELGEDSEQQNTKIKVGLHYLENFGLLERAENFSSFIQFELSHNTFAESMEQFEKYNQI
KSLSRFEADNFERLIQAMHVAKAYCSTNDEPFPLDRLSDEAGISLHDLTARIRELQRAEV
CSFEIPITLVITKGVRGDARKNHERIRQLEDQLLNALNELFGNENEIQINLRGLASRLDP
DNSKKIRASNIIDILEGWVAQKWVKLNRIAHDVVRLRDIKVAEHLPEHKILTATVLEVLY
QALADTTGARLPLKYELGRLATEVTQQTKLDWDKEELEVILLWLHQRKIIRLSDGLNLFQ
QSLKVRVIKNANISTVTRRYPRVEAHYEEQTRRTHYMVQYGKLKLTEQRQQFVSDYFGTN
QKEFISKYQISAQEITRPILPEDYKQIVEPLNSAQKEIVIASDPAMAVIAGPGSGKTRTI
VHRIAYLVKVKRVEPKRILVLAYNRNAVRELRLRLRNILGEQSSQIRVFTFHGLALALLG
RTVGEYSRTQAINFDRLLIEACELLAKGEEFEDVDDDIQARRIQLLGKLEYIFVDEYQDV
SEKEYRLIKLISGLNESEDKKKSVQINLCVIGDDDQNIFEFNGANTKYILQFKDEYNAKT
LLLTANYRSTENIIEVANELIQKNPERCKQAPEEQIHINYERQGTKGQPVVALKFNNAFQ
QAGWIKDKIQTWLDSGTSPNEIAILARNWDELNLIRLLLEKENISTCALKNNTISLVKNR
STHLLINALKKDYSLVLNPEESVQQRFEDFFERTGRSLTEPTVRTLINIAIDLDRERGYG
SENLALPISVDEILTAIFEFNENGESFLENKSVLVTSFHGSKGLEFRKIILLGNGFLVNT
GTIKSERRLFYVAMTRAKEELIVCSTQRNNFVQDAGLIPQVTLYPQIRLPQLVYYFDFTP
GDVNLGSQITQNNQQIIKNLMEGSPIELKANFPGNGWSIFTPNNQKIGYLSHNATEFLRN
KGIQAGQFEFQSHEVTVKYIYHHIKKDEITAEVLEDWFVVIPQIRVCRSLPNLIL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatttatccaatattgacttattttatgcttatttagacttagaaattaatagt
gaaaataatatataccgcataggattggtatctctgaatttaacaaaagatttttatcaa
gaaaatctaaatcaagcttacgaagaaataaggaagttgaaaaatagtaatttagcagtg
tgcggtcataacttccgccgctttgattacccttatctgattgagcaagaacagcaatta
tcttcttggcacataattgacactttagaactatcaatactcgctttccccttacagcat
tcgcataagctaaataaatattataagcaaagtgaatattcaagtaataatcctctagaa
gacgcacaggcaactcgattattactaggtcaacaattagaagcactatttaaaaagcct
gatgaagtacaacagatatatatttggctcctaacttgtggttgcgatgatgcagacctt
gcatatcaacaatttttcagcgatcaccttggtttgaagattgaacaacccgccatagaa
atgctgccagaaacaatgttgaaaagaataaatcaatcctatttgcagcagctatggtct
agtccacaaacttatgattttgagataagattatgcgtggcgggtttactggcttggaac
tatgagtgcaataccaatgaatcgaagcaggttttttgtgattggctcagacatttaaat
ggttttcaagctgtacttgagaatttgcgtcctttaagtacagatgaattcgctatcagt
tcttacttggaatattttgaaattcccagttttcgacctttgcagtcagaagctgtccaa
gcaattattaataatgaccgtccacttgttctgatgcctactggcggtggtaaatctttg
tgctatcaattgccagcattcatgttccatgaaaggcacaaagcactgactattgtaatt
tcaccgctacaagcattaatggcagatcaggtagcagatttagaacaagctgggtttttc
ttttccacctttattaatggtaatctttcagcagcagaacgccgccaacggctcgaagaa
ctgcgttttggttccaaaggtttgctatatatcagtcctgagcaactgcggtcaatgagt
attcgggcattgctagaacagcgtcctcccgtcctttgggtaattgatgaggctcactgt
gttagccaatggggtcacgattttcgaccagattatcgctacataccaaaatttattcag
gagttatatcaagagcggcagcttgcaatgcctttgttagctttgatgacagcaacagca
acagtcaaagttgttgaagatattaaaaagctatttgctcaatatcagttaaatattaat
cgtacaattgatggggcaataaccagagaaaatctgacttttcaggtcattccagtagca
gggaataaagagcaagtcttactagaacaagttaaagaagctattaaacttggtggtagt
acactagtttatactactacacgcaagaatgccgaaaaactggcagaacttctcaaccaa
agtcatattaaagctaaatactatcatggcaaacttgcaaaagaaaagaaacaggaagtt
ttgcaagaattcaaatcaggtaaattgaacgtaatcactgcgacttgtgcatttggtatg
ggcattaaccgcaaggatgtacgagcagttattcatcattccatgagtgccaatttagaa
ggttatgttcaagaagctggacgggcagggcgtgatggagagccagcagtttgtacttta
ctatttgacccaaaagatgctgatacagtttttcgtttgcaaagcttgaaccaattgagc
gaacaagatttgaaaaatgtcttgatctcaaccagacatattcgcgatcgcacttttggg
agtgccagagatgattggttttgggttacaactaatgaaatctttcaagagggcgacttt
gatgaagagcttggggaagattcagaacagcaaaatactaaaattaaagtaggtttgcat
tacttagaaaacttcggtttattagaaagagccgagaacttttccagctttatccaattt
gaattgagccataatacttttgcagagtctatggagcagtttgagaaatataatcagatt
aagagtttatctcggtttgaggcagataactttgagcggttgattcaggcaatgcacgtt
gctaaagcttattgtagtactaatgatgaaccgtttcccctagatcgtctcagcgatgaa
gctggcattagtttacatgacctgactgctagaattcgagaactacaaagggctgaagtc
tgttcttttgaaataccaattacccttgtgattaccaagggcgtaagaggggatgcccgt
aaaaaccacgaacgtattcgtcagctagaagaccaattgctcaatgcacttaatgagcta
tttggtaatgaaaatgaaatacaaataaatctgcgcggacttgcttctcgactcgaccca
gacaatagtaaaaaaatcagagcatccaatattatagatattttagaaggatgggttgct
caaaaatgggtgaagttaaaccgtatagctcatgatgtggttcgattgcgcgatataaaa
gttgcagagcatttacctgaacataaaattttaacagctacagtattagaagttttatat
caagcattggcagatacaacaggggcaagattacccctgaagtatgaactgggaaggctg
gctactgaagttacccaacagactaaacttgattgggataaggaagagttggaggttatt
cttctatggctgcaccaaagaaaaataattcgattgagtgacggactaaatttattccaa
cagtcactaaaagttcgtgtcataaaaaatgcaaatatttccacagtaacgcgccgttat
cctagagtcgaagctcattatgaagagcagactcgccgcactcattacatggtgcaatat
ggaaagctaaagttaacagaacagcgtcagcaattcgtaagtgattactttggcacaaat
caaaaagaatttatttcaaagtatcaaatttcggcacaagagattaccagaccaattctt
ccagaagattataagcagattgtagaaccattgaactctgctcaaaaagaaattgttata
gcttcagacccagcaatggcagtgatagcaggccctggttctggtaaaacaagaactatt
gttcatcgaattgcttatcttgtgaaggttaagcgagttgagccaaagcgtattttagtt
ttagcttacaaccgtaatgcagttagagaattacggctgcggttgcgaaatattcttggg
gaacaatcatctcaaattcgagtttttacattccacggtttagcattagcactgttggga
cgaaccgtaggtgaatatagtagaactcaggcaataaattttgatcggcttttaattgaa
gcttgcgaactacttgcaaaaggcgaagaatttgaagatgttgatgatgatattcaagcc
cgacgaattcaactgttaggtaagttggagtatatcttcgttgatgaatatcaagatgtc
agtgaaaaggaatatcgtttgattaaattaatttctggtttaaatgaatctgaggataaa
aagaagtcagtacaaattaatctctgcgttattggagatgatgaccaaaatatttttgaa
tttaatggtgctaatacgaagtatattcttcaatttaaagatgaatacaacgcaaaaaca
ttattgttgaccgcgaattaccgttctacagaaaatattattgaagttgctaatgagtta
attcaaaaaaatccagaaagatgtaaacaagctccagaagaacaaattcatattaactat
gagaggcaaggaaccaaagggcagcctgttgtagctttgaaattcaataacgcattccaa
caggcaggctggattaaagataaaatccaaacatggcttgactcaggtacttccccaaat
gagattgctattttagcacgcaactgggatgaacttaatcttataagattgctattagaa
aaagaaaatatttctacttgtgccttgaaaaataatactatatctttagtcaaaaatcgt
tctactcatctgctgattaatgctttaaagaaagactatagcctagttttaaatcctgaa
gaatcagttcagcaaagatttgaggatttttttgaacgtactggtcgtagcctaacagag
cctactgttagaaccttaatcaatattgctatagatttagatcgggagcgagggtatggg
tctgaaaatcttgcgctgcccattagtgttgatgaaatattaactgctatctttgaattt
aatgaaaatggtgaatcttttttagaaaacaagtcagttctagttactagttttcatggc
tcaaaaggtttagagttccgtaaaatcatactattaggtaatggatttctagttaatact
ggcacaatcaaatcagaacgtcggctattttatgttgctatgactcgtgccaaagaagaa
ttaattgtttgttctactcaaaggaacaattttgtacaagatgctggtttaattcctcaa
gtaactctttatcctcagattcgacttcctcaattagtttattactttgatttcactcca
ggtgatgttaatttaggatctcagattactcaaaataaccaacaaattattaaaaactta
atggagggtagtccaattgagctaaaagccaattttcctggaaatggttggagcattttt
acacccaataatcaaaaaatcggttatttatctcacaatgcaacagaatttttaagaaac
aaaggaattcaagctggtcagtttgaattccaaagccatgaggtgacagttaaatatatc
taccatcacattaaaaaagatgagataacagcagaagttttagaggattggtttgttgtt
attcctcaaatacgagtgtgcagaagcttaccgaacctgattctataa
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integrated database retrieval system
