Nostoc punctiforme: Npun_R3625
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Entry
Npun_R3625 CDS
T00713
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
npu
Nostoc punctiforme
Pathway
npu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Npun_R3625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npu03019
]
Npun_R3625
03016 Transfer RNA biogenesis [BR:
npu03016
]
Npun_R3625
Enzymes [BR:
npu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Npun_R3625
Messenger RNA biogenesis [BR:
npu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Npun_R3625
Transfer RNA biogenesis [BR:
npu03016
]
Prokaryotic type
tRNA degradation factors
Npun_R3625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_SLS1_2
TLN1-like_RS
aRib
Motif
Other DBs
NCBI-ProteinID:
ACC82020
UniProt:
B2J2V3
LinkDB
All DBs
Position
complement(4567035..4569191)
Genome browser
AA seq
718 aa
AA seq
DB search
MAEVDKSISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDE
LVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGS
PHGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLVIVQEAPPEVDQTL
ENYIRDRASGQIKKILSQFTFTKPERDAALDVVKDEIATTIKELPEEDPIRVAATANNKA
LGNTFKDITKYFMRRQIIEDNVRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVL
STCTLGTPGDAQNLNDDMQLDQHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERS
LIPVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIK
DGDEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKIPGLSLDVISQAVHQAKAAR
LHILEKMLACIDTPRIETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDENKAKRARNIIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIIKVREIDNKGRINLTRLGIHPDQAAAAREAAAVNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagttgataagtcaatatccttcgatggaagggatattcgactgaaagtaggc
ttactagctccccaggcaggtgggtcggttttgatagaatcaggggacacatccgtttta
gtgacagctacgcgatcgcaagccagagaaggcattgattttcttcccctcactgtagat
tacgaagaaagactgtatgcagctggtaggattcccggagggatcatgcggcgggaaggt
cgtccaccagaaaaaacaattctcactagccgtcttatagaccgtcccatgcgtcccttg
ttcccctcatggttacgggatgacctgcaaattatcgccttaacgctatcgatggacgag
ttggttccacccgatgtgctagcagttacaggcgcttccatcgctaccctgattgcccag
attccttttaatgggccaatggcagcagttcgcgttggtttagtgggagatgattttatt
attaaccccacttatgcagaaattgaagccggagatttggatctggtagtagccggttct
ccacatggcgtaatcatggtggaggcgggagccaatcagttgccagagcgagatatcatc
gaggcaattgactttggttatgaagcagtgcgggacttaatcaaagcgcagcaagattta
gtagcagaactgggcttagtgatagtgcaagaagcaccaccagaagtagaccagacgcta
gaaaattatatccgcgatcgcgctagcggtcagattaagaaaatcctgtctcaatttact
ttcaccaaacccgaacgcgatgcagctttagatgtcgtcaaggatgaaattgccacgacg
attaaagaactgccagaagaagacccaattcgagttgctgcaactgcaaataacaaagca
cttggtaacactttcaaagatattactaagtacttcatgcggcggcaaatcatcgaagat
aacgttcgcgttgatggtcgtaaactcgatgaagtgcgacgtgtttcttgtttagttggt
gtcttaccaaagcgagtccacggtagcggtttatttaatcgggaactaactcaggtatta
tccacttgtactttgggtacaccaggtgatgctcaaaacctcaacgatgatatgcagtta
gaccaacataagcgttatctgcatcattacaacttcccgcctttctcagtcggggaaacc
aagccaatgcgttctccaggaaggcgtgaaatcggtcacggggcattagcagagcgatcg
ctaattcctgtgctaccctcaaaagaacaatttccctacgtgattcgcatcgtatcagaa
gtactttcttccaacggttccacttcaatgggttcagtctgcggttccactctcgccctc
atggatgctggtgtaccaattctcaaacccgttagtggcgcagcaatgggtctgattaag
gatggggacgaagtgcgaatcctcaccgacattcagggcattgaagactttttgggcgat
atggacttcaaggttgccgggacggataccggaattaccgccttgcaaatggatatgaaa
atccccggtttgtcgttggatgttatttcccaagctgtccaccaagccaaagcagcccgg
ttgcacattctggagaaaatgctcgcctgcattgatacaccacggattgaaacctcacct
tatgccccacgtctgttaacaatcaagattgattcagacatgattggtttagtcatcggg
cctggaggcaagactattaagggcatcacagaggaaactggtgcaaaaattgacatcgaa
gatgatggcaccgtgacaatctcggctgtggatgagaacaaggcgaagagagccagaaac
atcatccaaggtatgacccgcaaactccacgaaggagatgtctatgcaggacgcattact
cggattataccgataggtgcatttgtggaatttctgcctgggaaagaagggatgatccac
atctcacaactagctgactaccgcgttggcaaagttgaggatgaagtagcggtgggcgat
gaagtgattatcaaagtccgtgaaattgataacaaaggtcggattaatctcacccgcttg
ggtatccacccagatcaagcagcagcagcaagagaagctgcggcggtgaatcggtaa
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