Candidatus Nitricoxidivorans perseverans: OHM77_03400
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Entry
OHM77_03400 CDS
T09820
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
npv
Candidatus Nitricoxidivorans perseverans
Pathway
npv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHM77_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npv03019
]
OHM77_03400
03009 Ribosome biogenesis [BR:
npv03009
]
OHM77_03400
Enzymes [BR:
npv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OHM77_03400
Messenger RNA biogenesis [BR:
npv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OHM77_03400
Ribosome biogenesis [BR:
npv03009
]
Prokaryotic type
rRNA processing factors
OHM77_03400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
WIM06346
UniProt:
A0AA49J0M1
LinkDB
All DBs
Position
668010..670568
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AA seq
852 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEVSRACFKQGIDAGKARIQDALSVGQELIVQVEKDERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELREVMDRLEVPGGASLIARTAGIGRTYEELQ
WDLNYLLQLWGAIEGAAKSQSGAFLIYQESSLVIRAIRDYFHADIGEILIDTDEIYEQAQ
QFMAHVMPGNLARVKRYRDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSV
DVNSGRATKGSDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESARNQREVENR
LRDALHFDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCTGTGHIRSTESAALH
ILRILEEEAMKENTGAIHCQVPVDVATFLLNEKRVDIAKIEVRHRINLVIVPNRHLETPQ
HEIVRLRHDQLNAEDLAIPSYQMAEKAAEEAYQPPSAQIESKAARQEAAVKGITPEQPAP
IVEPRPQAAQATRNEAKEGPSIIARIFSFFRGNKAAQEPQPEPKSGRTGRRERGERGARG
EDRNDNRRGRNRKEGRENRDEPRREPGERTPRGERSGQRGGERGRQREEQQAEPVQKEGR
RQRSREERPAEPRPPRTPRLESMTEAVAEEPASSTSVTEGNAPQTEAQGEGRRRGRRGRG
GRGGERRSEESVSAPVETTEAVVVEPVMPKPMPWPVPMPVAAVEEVAAPAVAPPAEEPVA
EPAPAPEAPKPAPAAMPPVDLQQAGLVMIETSAEKSNAVSEIVVSSQPLGRKPRPAVVIA
SEPLQMVETKQD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcaggccgaggaactccgcgtcgcgatcgtcgat
ggtcagaaactgatcgatctcgacatcgaatcggccgccaaggaacaacgcaaaagcaat
atctacaaagcggtcatcacccgcatcgagcccagcctcgaagccgccttcgtcgattac
ggcgccgagcgccatggctttctgcctttcaaggaagtttcccgtgcctgtttcaagcag
ggcatcgatgccggcaaggcgcgcatccaggatgcgttgtccgtcggccaggagctgatc
gtccaggtcgaaaaggacgagcgcggcaacaagggcgcggcgctgaccacctttatctcg
ctggccggccgctatcttgtcctgatgcccaacaacccgcgcggcggcggcgtttcgcgc
cgcgtcgagggcgaggatcgtcaggaactgcgcgaggtcatggaccggctggaagtaccc
ggaggcgccagcctgatcgcccgcacggccggcatcggccgcacttatgaagaactccag
tgggacctcaactacctgctccagctgtggggtgccatcgagggcgccgccaagtcgcag
agcggcgccttcctgatctatcaggaatccagcctggtcatccgcgccatccgcgattat
ttccacgcggacatcggcgaaattctgatcgacacggacgaaatctacgaacaggcccag
caattcatggcccacgtcatgccgggtaacctggcgcgcgtcaagcgctaccgggacgac
gtgcccctgttctcgcgcttccagatcgaacaccagatcgaatcggcctactcgcgccag
gtcaatcttccctccggcggcgccgtggtcatcgatcataccgaggccctggtctcggtg
gacgtcaactccggtcgcgccaccaagggttccgacatcgaggaaaccgcgttgcgcacc
aacctcgaagccgccgatgaagttgcccgccagcttcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaatcggcgcgcaaccagcgcgaggtcgagaaccgc
ctgcgcgacgcgctccatttcgaccgcgcccgcgtccagacgggcaagatttcacgcttc
ggcctgctggaactttcccgccagcgcctgcgcccggcgctcgccgagaccagctacatc
acctgcccccgctgcacgggcacgggccacatccgctcgaccgaatcggcggcgctgcac
atcctgcgcatcctcgaggaagaggcgatgaaggaaaacaccggcgccatccattgccag
gttccggtcgatgtcgccactttcctgctcaacgagaagcgcgtcgatatcgccaagatc
gaagtgcgccaccgcatcaacctggtcatcgtgcccaaccggcacctggaaacgccccag
cacgaaatcgtccgcctgcgccacgatcagctgaacgccgaggacctcgcgattccgagc
taccagatggccgagaaggccgccgaggaggcctatcagccgccctccgcccagatcgaa
tcgaaggcggcccggcaggaagccgccgtcaagggcatcacgcccgaacaaccggcgccc
atcgtcgagcccaggccccaggccgcgcaagccacccggaacgaagcgaaggaagggccg
agcatcatcgccaggatattctccttcttccgcggcaataaggcggcgcaggaaccccag
ccggagccgaaatccggcaggaccggccgccgcgagcgcggcgagcggggcgcccgtggc
gaagatcgcaacgacaaccgccgcggccgcaaccgcaaggaaggccgcgagaatcgcgac
gagccgcgccgcgagccgggagaacgcacccctcgcggggaacggagcggtcaacgcggc
ggcgaacgcggaaggcagcgggaagagcaacaggccgaacccgtccagaaggaaggacgc
cgccagcgtagccgcgaagagcgtccggccgagccgcgcccgcccaggacgccccgcctg
gaatcgatgacggaggccgtcgccgaagaaccggcatcttcgacgtccgtgaccgaagga
aacgcgccccagacggaagcccagggagaaggccgccgtcgcggtcgccgcggccgtggc
ggtcgtggcggtgagcggcgttccgaggaaagcgtatccgcgcccgtggaaacgacagaa
gccgtcgtcgtcgaacccgtcatgccgaagcccatgccctggcctgtgcccatgcctgtc
gccgccgtcgaagaagtcgcagcgccggcggtggcgcctcctgccgaagaacccgttgcg
gagcccgcgccggcaccggaagcgccgaagccggcgccggcggccatgcctcccgtcgac
cttcagcaggccgggctggtgatgatcgagacaagcgccgagaaatccaacgcggtttct
gaaatcgtcgtttcgtcccagccgctcggccgcaagccgaggccggcggtcgtgattgcc
agcgagccgctgcaaatggtggaaacgaagcaagactga
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