Candidatus Nitricoxidivorans perseverans: OHM77_05355
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Entry
OHM77_05355 CDS
T09820
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
npv
Candidatus Nitricoxidivorans perseverans
Pathway
npv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHM77_05355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npv03019
]
OHM77_05355
Enzymes [BR:
npv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OHM77_05355
Messenger RNA biogenesis [BR:
npv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OHM77_05355
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WIM06694
UniProt:
A0AA49FMU7
LinkDB
All DBs
Position
complement(1060116..1061441)
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AA seq
441 aa
AA seq
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MQFTDLGLRAEILRSISEQGYDTPTPIQAQAIPVVLEGRDLMAVAQTGTGKTAGFTLPIL
QLLSSRDAGLSMKRFKPRCLILVPTRELAVQVQDSVRTYGRHLRLKSTTIYGGVGMGAQL
RDLKAGVDIIVATPGRLLDHIEQRSVDLSGIEILVLDEADRMLDMGFIRDIRKVIALLPK
KKQSLLFSATFPDEIRALVASLLNNPASVEVARRNAPAEAVAQSVYHVDRERKRDLLIQL
IDDHGWHQVLVFTRTKHGADALSDRLLKAGIKSAALHGNKSQGQRQRALDDFKRLKVHVL
VATDIAARGIDIDELPHVVNYELPNVPEDYVHRIGRTGRAGSSGEAVSLVCVDEHKLLRD
IERLLKKDIEKRVVPGFEPDPRIRPEPIQKPRGDRGARNSQSPRNGAAPSGQRKPQQRAS
NGGARAGQRGGASHHTGARHH
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaccgacctcggccttcgcgccgaaattctgcgttccatttccgagcagggc
tacgacacgcccacgcccatccaggcccaggccatccccgtggtgctcgaaggccgcgac
ctgatggccgtcgcccagacgggcaccggcaagaccgccggctttaccctgcccatcctg
caactgctgtcttcccgcgatgccggcctctccatgaagcggttcaagccccgctgcctg
atcctcgtgccgacgcgcgaactggcggtccaggtccaggacagcgtgcgcacctacggc
cggcacctgcgcctgaagtcgaccaccatctacggcggcgtcggcatgggtgcgcaactg
cgcgacctcaaggccggcgtcgacatcatcgtcgccacgcccggccgcctgctcgaccac
atcgagcagcgcagcgtcgacctttccggcatcgagatcctggtgctcgacgaggccgat
cgcatgctcgacatgggcttcatccgcgacatccggaaggtcatcgccctgctgccgaag
aagaagcagagcctgctgttctcggccaccttccccgacgaaatccgcgccctggtcgct
agtttgctcaacaatcccgccagcgtcgaagtcgcgcgccgcaacgccccggccgaagcc
gtcgcgcagtcggtctaccacgtcgaccgcgagcgcaagcgcgacctgctgatccagctg
atcgacgaccacggctggcaccaggtgctcgtcttcacgcgcaccaagcacggcgcagac
gccctttccgaccgcctgctcaaggcgggcatcaagtccgcggcgctgcacggcaacaag
agccagggccagcgccagcgggcgctcgacgacttcaagcgcctgaaggtgcatgtgctg
gtggccaccgacatcgccgcgcgcggcatcgacatcgacgagctgccgcacgtcgtgaac
tacgaactgcccaacgtgccggaagactacgttcaccgcatcggccgaaccggccgcgcc
ggcagttccggcgaggcggtctcgctggtctgcgtcgacgagcacaaactgctgcgcgac
atcgagcggctgctgaagaaggacatcgaaaagcgcgtcgttcccggcttcgagcccgat
ccgcgcatccggcccgagccgatccagaagcctcgcggcgaccgtggcgcccgcaatagc
cagtccccgcggaacggcgctgcgccctccggccagcgcaagccccagcagcgtgcatcg
aatggcggcgcgcgcgcgggccagcgcggcggtgcgagccatcacacgggcgcgcggcac
cactga
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